Factsheet for Zm00001d047373_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016016_P001
Zm00001d024336_P001
Zm00001d028396_P001
Zm00001d031028_P004
Zm00001d040834_P001
Zm00001d043386_P001
Zm00001d047941_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	Zm00001d031028_P004	AT1G79810.1	23336935
AT2G17200.1	Zm00001d031028_P004	AT1G79810.1	23336935
AT2G17200.1	Zm00001d016016_P001	AT3G16120.1	21798944
AT2G17200.1	Zm00001d043386_P001	AT3G16120.1	21798944
AT2G17200.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d047941_P001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029782_P004	Maize	cytosol	86.63	84.15
Os10t0542200-01	Rice	plasma membrane, plastid	79.17	79.3
TraesCS1D01G206500.1	Wheat	cytosol	76.39	78.01
TraesCS1B01G217000.1	Wheat	cytosol	76.74	77.82
TraesCS1A01G203000.1	Wheat	cytosol	75.69	76.76
HORVU1Hr1G052260.2	Barley	cytosol	73.61	74.26
Zm00001d027514_P002	Maize	cytosol	64.76	69.59
Zm00001d048343_P001	Maize	cytosol	63.89	69.04
GSMUA_Achr5P11110_001	Banana	cytosol	56.94	61.54
PGSC0003DMT400048093	Potato	extracellular	8.51	60.49
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.4	60.0
KRH07807	Soybean	cytosol, mitochondrion, nucleus	6.94	59.7
PGSC0003DMT400003987	Potato	cytosol	56.42	58.88
Solyc02g082800.2.1	Tomato	plastid	56.42	58.77
KRH76549	Soybean	cytosol	53.82	57.3
Solyc03g032160.2.1	Tomato	plastid	55.38	57.27
KRH28904	Soybean	cytosol	53.47	56.93
KRH07920	Soybean	cytosol	52.6	56.01
KRH69678	Soybean	nucleus	52.78	55.78
VIT_03s0038g03680.t01	Wine grape	cytosol	55.38	55.0
CDY26796	Canola	cytosol	50.17	54.63
CDX88001	Canola	cytosol	51.39	54.61
CDY31374	Canola	cytosol, plastid	50.69	54.48
Bra009657.1-P	Field mustard	cytosol	51.91	54.17
CDY47488	Canola	cytosol	49.31	54.1
AT2G17190.1	Thale cress	cytosol	50.52	54.09
CDY07870	Canola	cytosol	50.52	54.09
Bra037281.1-P	Field mustard	cytosol	50.87	54.06
Bra002028.1-P	Field mustard	cytosol, plastid	51.56	54.0
AT2G17200.1	Thale cress	cytosol	51.39	53.72
CDX75489	Canola	cytosol	48.09	53.68
CDX71349	Canola	cytosol	51.04	53.65
Bra011602.1-P	Field mustard	cytosol	42.36	53.39
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	45.66	50.97
PGSC0003DMT400045106	Potato	cytosol	37.5	46.55
Solyc02g060600.1.1	Tomato	cytosol	22.22	45.55
Solyc02g060580.1.1	Tomato	cytosol	22.92	43.14
Solyc02g061720.1.1	Tomato	cytosol	24.83	42.31
Solyc02g061670.1.1	Tomato	cytosol	25.0	41.03
Solyc02g060590.1.1	Tomato	cytosol	9.03	38.81
Solyc02g061680.1.1	Tomato	cytosol	32.12	38.3
Solyc02g061710.1.1	Tomato	nucleus	15.97	37.55
Solyc02g061610.1.1	Tomato	cytosol	32.47	37.55
Solyc02g061640.1.1	Tomato	cytosol	8.68	37.31
GSMUA_Achr1P02760_001	Banana	cytosol	8.16	36.43
CDX69126	Canola	nucleus	41.67	33.29
Solyc02g060570.1.1	Tomato	cytosol	34.2	27.79

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	ProteinID:AQL06288.1	EMBL:BT066976	EMBL:BT088304
UniProt:C0PFA7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940
PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000195CB91	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
EnsemblPlantsGene:Zm00001d047373	EnsemblPlants:Zm00001d047373_P001	EnsemblPlants:Zm00001d047373_T001	SEG:seg	:	:

Description

Ubiquitin domain-containing protein DSK2b

Coordinates

chr9:+:128051621..128058240

Molecular Weight (calculated)

59694.4 Da

IEP (calculated)

4.605

GRAVY (calculated)

-0.369

Length

576 amino acids

Sequence
(BLAST)

001: MASGGEGAGS GESPPAASVE AAAVEATLHI RCANGSKFTV QTDLGATVGA FKEVLSGSCG VPAPQQRLIY KGRILKDEQT LDSYGVETDH TIHLVRGVAT
101: PAASSAPAAA NPLASFTPSS GPAGGLGGLF PGVDAPGNDR PSGIFRPGFP ELEQVEQHLS QNPNLMREIM NMPAMQNLMN NPDLIRNMIM NNPQMREIMD
201: RNPDLAHVLN DPSVLRQTLE AARNPEIMRE MMRNTDRAMS NIESSPEGFN MLRRMYETVQ EPFLNATTMG GEGSTASNPF SALLGNQGSS QPGQGQPATN
301: APTTGSESTT GTPAPNTNPL PNPWSTNAGS AQGATRTPSG NARTGGVGGT GATGGLGGLG SPELSSLLGG LAGSPRTGSA GGLGGSGSPD LGSMLGGSPD
401: VSPFSQMLQN PAMIQMMQNI MSDPQTMNQL LNLNPNARNL MESNTHMREM FQNPEFLRQL TSPETLQQLL SFQQTLLGQL GQHQPSQGGN NAGSATGTRG
501: NPSLDTLMSM LSGLGSGGGL GVPNTSSVPP EELYATQLTQ LQEMGFIDTA ENIQALVATA GNVHAAVERL LGNLGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.