Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G206500.1 | Wheat | cytosol | 98.42 | 99.11 |
| TraesCS1A01G203000.1 | Wheat | cytosol | 98.94 | 98.94 |
| HORVU1Hr1G052260.2 | Barley | cytosol | 90.85 | 90.37 |
| Os10t0542200-01 | Rice | plasma membrane, plastid | 80.11 | 79.13 |
| EER92003 | Sorghum | cytosol | 78.87 | 77.24 |
| Zm00001d047373_P001 | Maize | cytosol | 77.82 | 76.74 |
| Zm00001d029782_P004 | Maize | cytosol | 75.7 | 72.51 |
| TraesCS4B01G325900.2 | Wheat | cytosol | 65.49 | 69.92 |
| KRH07807 | Soybean | cytosol, mitochondrion, nucleus | 7.92 | 67.16 |
| GSMUA_Achr5P11110_001 | Banana | cytosol | 59.15 | 63.04 |
| GSMUA_Achr1P02770_001 | Banana | extracellular, plasma membrane, vacuole | 48.24 | 60.22 |
| PGSC0003DMT400048093 | Potato | extracellular | 8.45 | 59.26 |
| PGSC0003DMT400003987 | Potato | cytosol | 57.22 | 58.88 |
| KRH76549 | Soybean | cytosol | 55.99 | 58.78 |
| Solyc02g082800.2.1 | Tomato | plastid | 57.22 | 58.77 |
| KRH07920 | Soybean | cytosol | 55.28 | 58.04 |
| KRH28904 | Soybean | cytosol | 55.28 | 58.04 |
| Solyc03g032160.2.1 | Tomato | plastid | 56.87 | 57.99 |
| CDX88001 | Canola | cytosol | 54.58 | 57.2 |
| CDY31374 | Canola | cytosol, plastid | 53.87 | 57.09 |
| Bra009657.1-P | Field mustard | cytosol | 55.46 | 57.07 |
| AT2G17200.1 | Thale cress | cytosol | 55.28 | 56.99 |
| Bra002028.1-P | Field mustard | cytosol, plastid | 55.11 | 56.91 |
| VIT_03s0038g03680.t01 | Wine grape | cytosol | 57.92 | 56.72 |
| CDY26796 | Canola | cytosol | 52.82 | 56.71 |
| KRH69678 | Soybean | nucleus | 54.4 | 56.7 |
| AT2G17190.1 | Thale cress | cytosol | 53.52 | 56.51 |
| CDY07870 | Canola | cytosol | 53.52 | 56.51 |
| CDY47488 | Canola | cytosol | 51.94 | 56.19 |
| Bra037281.1-P | Field mustard | cytosol | 53.52 | 56.09 |
| CDX75489 | Canola | cytosol | 50.88 | 56.01 |
| CDX71349 | Canola | cytosol | 53.7 | 55.66 |
| Bra011602.1-P | Field mustard | cytosol | 43.49 | 54.05 |
| VIT_04s0210g00220.t01 | Wine grape | cytosol, nucleus | 47.54 | 52.33 |
| PGSC0003DMT400045106 | Potato | cytosol | 37.15 | 45.47 |
| Solyc02g060600.1.1 | Tomato | cytosol | 22.36 | 45.2 |
| Solyc02g060580.1.1 | Tomato | cytosol | 23.77 | 44.12 |
| Solyc02g061670.1.1 | Tomato | cytosol | 25.88 | 41.88 |
| Solyc02g061720.1.1 | Tomato | cytosol | 24.47 | 41.12 |
| Solyc02g061680.1.1 | Tomato | cytosol | 33.1 | 38.92 |
| Solyc02g061710.1.1 | Tomato | nucleus | 16.37 | 37.96 |
| Solyc02g061610.1.1 | Tomato | cytosol | 32.92 | 37.55 |
| Solyc02g060590.1.1 | Tomato | cytosol | 8.63 | 36.57 |
| GSMUA_Achr1P02760_001 | Banana | cytosol | 8.1 | 35.66 |
| Solyc02g061640.1.1 | Tomato | cytosol | 8.27 | 35.07 |
| CDX69126 | Canola | nucleus | 43.31 | 34.12 |
| Solyc02g060570.1.1 | Tomato | cytosol | 34.86 | 27.93 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:19.3.4.6 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:IPR015940 | PFAM:PF00240 | PFAM:PF00627 | PRINTS:PR00348 | PFscan:PS50030 |
| PFscan:PS50053 | PANTHER:PTHR10677 | PANTHER:PTHR10677:SF28 | SMART:SM00165 | SMART:SM00213 | SMART:SM00727 |
| SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd | EnsemblPlantsGene:TraesCS1B01G217000 | EnsemblPlants:TraesCS1B01G217000.1 | InterPro:UBA |
| InterPro:UBA-like_sf | InterPro:Ubiquilin | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | TIGR:cd14399 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:393075730..393080197
Molecular Weight (calculated)
58375.3 Da
IEP (calculated)
4.515
GRAVY (calculated)
-0.328
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGAGDGEGA GSESPPSGAR ATLNIRCANG AKFTLQADLG ETVGAFKEVV AGSCDVPAPQ QRLIYKGRIL KDEQTLESYG VETDHTIHLV RGVAQPAASG
101: APAAASPQAS TTPTSGPAGG LGGLFPGLGA TGAASGRPAG LFGAGLPELD QMQQQLSQNP NLMREIMNMP MMQSLMNNPD LIRNMIMNNP QMRDIIDRNP
201: DLAHVLNDPS VLRQTLEAAR NPEIMREMMR NTDRAMSNIE ASPEGFNMLR RMYETVQEPF LNATTMGGGG EGTPASNPFA ALLGNQGPNQ AGNAATNAPT
301: TGPESTTGTP VPNTNPLPNP WSNNAGGAQG TPRSGPAAST RAGATGGPGG LGSADLSSLL GGLGGNARTG AAGGLGGLGS ADLGSMLGGP PDAALLSQML
401: QNPAMMQMMQ NIMSDPQSMN QLLSMNPNAR SLMESNTQLR DMFQNPEFLR QMASPEALQQ LLSFQQTLSS QLGQNQPSQA GNLGGNGTGT RGNVGLDTLM
501: GMLSGLGAGG GLGVPNASNV PPEELYATQL GQLQEMGFFD TAENIRALMA TSGNVHAAVE RLLGNFGQ
101: APAAASPQAS TTPTSGPAGG LGGLFPGLGA TGAASGRPAG LFGAGLPELD QMQQQLSQNP NLMREIMNMP MMQSLMNNPD LIRNMIMNNP QMRDIIDRNP
201: DLAHVLNDPS VLRQTLEAAR NPEIMREMMR NTDRAMSNIE ASPEGFNMLR RMYETVQEPF LNATTMGGGG EGTPASNPFA ALLGNQGPNQ AGNAATNAPT
301: TGPESTTGTP VPNTNPLPNP WSNNAGGAQG TPRSGPAAST RAGATGGPGG LGSADLSSLL GGLGGNARTG AAGGLGGLGS ADLGSMLGGP PDAALLSQML
401: QNPAMMQMMQ NIMSDPQSMN QLLSMNPNAR SLMESNTQLR DMFQNPEFLR QMASPEALQQ LLSFQQTLSS QLGQNQPSQA GNLGGNGTGT RGNVGLDTLM
501: GMLSGLGAGG GLGVPNASNV PPEELYATQL GQLQEMGFFD TAENIRALMA TSGNVHAAVE RLLGNFGQ
001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q
Arabidopsis Description
DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.