Factsheet for TraesCS7D01G299400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, golgi, mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G203000.1
TraesCS1B01G217000.1
TraesCS1D01G206500.1
TraesCS4B01G325900.2
TraesCS4D01G322800.1
TraesCS5A01G498100.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	TraesCS1A01G203000.1	AT2G17200.1	23336935
AT1G79810.1	TraesCS1B01G217000.1	AT2G17200.1	23336935
AT1G79810.1	TraesCS1D01G206500.1	AT2G17200.1	23336935
AT1G79810.1	TraesCS4B01G325900.2	AT2G17200.1	23336935
AT1G79810.1	TraesCS4D01G322800.1	AT2G17200.1	23336935
AT1G79810.1	TraesCS5A01G498100.1	AT2G17200.1	23336935
AT1G79810.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT1G79810.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT1G79810.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT1G79810.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT1G79810.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	96.43	99.66
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	95.78	98.99
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	96.75	86.13
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	90.26	81.29
KXG24014	Sorghum	cytosol, nucleus, peroxisome	88.31	80.47
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	87.01	79.53
Solyc12g027700.1.1	Tomato	extracellular	11.36	72.92
CDY70404	Canola	cytosol, nucleus, peroxisome	53.57	72.05
KRH44319	Soybean	plastid	76.95	71.82
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	76.95	71.17
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	74.68	69.07
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	74.35	68.77
EES16336	Sorghum	cytosol, golgi, peroxisome	80.19	68.61
CDX79411	Canola	plastid	74.35	68.36
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	76.3	67.92
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	80.52	67.76
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	76.62	67.43
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	76.62	66.86
KRH75574	Soybean	endoplasmic reticulum, extracellular	37.99	66.1
KRH47250	Soybean	cytosol, nucleus, peroxisome	75.65	64.01
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	32.14	56.25
PGSC0003DMT400006784	Potato	cytosol	38.31	39.07

Protein Annotations

MapMan:23.4.1.4.1	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005829
GO:GO:0006464	GO:GO:0006513	GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0007031
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009506	GO:GO:0009628
GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	PFAM:PD124462	PFAM:PF00097
PFAM:PF04757	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR45174	InterPro:Pex_N	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7D01G299400	EnsemblPlants:TraesCS7D01G299400.1	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	TIGR:cd16526	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:379312454..379316814

Molecular Weight (calculated)

35102.9 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.028

Length

308 amino acids

Sequence
(BLAST)

001: MLKIARLELT MIPITISRVN QFDAARLDVE MSAMLKEQLV KVFSLMKPGL LFQYEPELDA FLEFLIWRFS IWVDKPTPGN ALMNLRYRDE RAAPIAGKEV
101: RTGLEGPGLS VSQKILYCIS TVGGQYLLSR LQSFSAFRRW GDSEQRPLAR RAWGLVQHAE GLYRAVSFFN LLSFLYGGRY KTLVERILKA RLVYGSPNMN
201: RAVSFEYMNR QLVWNEFSEM LLLLLPLLNS SSVKKFLLPF SKDKSASSSG DEANCPICVS SPSIPFVALP CQHRYCYYCL RTRSAATSSY RCERCNEVVV
301: AIQRHGSS

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.