Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G052260.2 | |
| HORVU4Hr1G082050.15 | |
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G204300.2 | Wheat | cytosol, peroxisome, plastid | 86.13 | 100.0 |
| TraesCS7A01G303900.1 | Wheat | cytosol, nucleus, peroxisome | 85.55 | 99.33 |
| TraesCS7D01G299400.1 | Wheat | cytosol, golgi, mitochondrion, nucleus | 86.13 | 96.75 |
| Os05t0275700-01 | Rice | cytosol, nucleus, peroxisome, plastid | 82.08 | 83.04 |
| KXG24014 | Sorghum | cytosol, nucleus, peroxisome | 80.64 | 82.54 |
| Zm00001d031028_P004 | Maize | cytosol, nucleus, peroxisome | 78.61 | 80.71 |
| KRH44319 | Soybean | plastid | 70.23 | 73.64 |
| Solyc12g027700.1.1 | Tomato | extracellular | 10.12 | 72.92 |
| AT1G79810.1 | Thale cress | cytosol, nucleus, peroxisome | 69.65 | 72.37 |
| CDY70404 | Canola | cytosol, nucleus, peroxisome | 47.69 | 72.05 |
| Bra003533.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 68.5 | 71.17 |
| CDX67927 | Canola | cytosol, nucleus, peroxisome, plastid | 68.21 | 70.87 |
| EES16336 | Sorghum | cytosol, golgi, peroxisome | 73.12 | 70.28 |
| CDX79411 | Canola | plastid | 67.92 | 70.15 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 73.99 | 69.95 |
| VIT_09s0002g04110.t01 | Wine grape | cytosol, nucleus, peroxisome | 69.08 | 69.08 |
| PGSC0003DMT400042540 | Potato | cytosol, mitochondrion, peroxisome, plastid | 69.36 | 68.57 |
| Solyc06g066570.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 69.36 | 67.99 |
| KRH47250 | Soybean | cytosol, nucleus, peroxisome | 69.94 | 66.48 |
| KRH75574 | Soybean | endoplasmic reticulum, extracellular | 33.81 | 66.1 |
| Solyc03g120520.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.61 | 56.25 |
| PGSC0003DMT400006784 | Potato | cytosol | 35.26 | 40.4 |
Protein Annotations
| MapMan:23.4.1.4.1 | Gene3D:3.30.40.10 | UniProt:A0A287WUQ7 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 |
| GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006513 | GO:GO:0006629 | GO:GO:0006635 | GO:GO:0006810 |
| GO:GO:0007031 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009506 |
| GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016558 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU7Hr1G072200 | EnsemblPlants:HORVU7Hr1G072200.2 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PD124462 | PFAM:PF00097 | PFAM:PF04757 | ScanProsite:PS00518 | PFscan:PS50089 |
| PANTHER:PTHR45174 | InterPro:Pex_N | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B466599 | InterPro:Znf_C3HC4_RING-type |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr7H:+:401765200..401770736
Molecular Weight (calculated)
39006.2 Da
IEP (calculated)
9.759
GRAVY (calculated)
-0.165
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: KTKRASLKKN GEKEGENLLV HDHEVESGHP SLLRQTSCFS GGRSAGATMI PITISRVNQF DAARLDVEMS AMLKEQLVKV FSLMKPGLLF QYEPELDAFL
101: EFLIWRFSIW VDKPTPGNAL MNLRYRDERA APIAGKEVRT GLEGPGLSVS QKILYCISTV GGQYLLSRLQ SFSAFRRWGD SEQRPLARRA WGLVQHAEGL
201: YRAVSFFNLL SFLYGGRYKT LVERILKARL VYGSPNMNRA VSFEYMNRQL VWNEFSEMLL LLLPLLNSSS VKKFLLPFSK DKSASSSGDE ANCPICVSSP
301: SIPFVALPCQ HRYCYYCLRT RSAATSSYRC ARCNEVVVAI QRHGSS
101: EFLIWRFSIW VDKPTPGNAL MNLRYRDERA APIAGKEVRT GLEGPGLSVS QKILYCISTV GGQYLLSRLQ SFSAFRRWGD SEQRPLARRA WGLVQHAEGL
201: YRAVSFFNLL SFLYGGRYKT LVERILKARL VYGSPNMNRA VSFEYMNRQL VWNEFSEMLL LLLPLLNSSS VKKFLLPFSK DKSASSSGDE ANCPICVSSP
301: SIPFVALPCQ HRYCYYCLRT RSAATSSYRC ARCNEVVVAI QRHGSS
001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
Arabidopsis Description
PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.