Factsheet for Solyc03g120520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
peroxisome 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g027700.1.1	Tomato	extracellular	12.5	45.83
CDY70404	Canola	cytosol, nucleus, peroxisome	53.98	41.48
KRH75574	Soybean	endoplasmic reticulum, extracellular	36.93	36.72
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	72.16	35.98
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	56.25	33.22
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	56.25	33.22
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	64.77	32.95
KRH44319	Soybean	plastid	60.8	32.42
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	56.25	32.14
KRH47250	Soybean	cytosol, nucleus, peroxisome	61.93	29.95
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	60.8	29.23
KXG24014	Sorghum	cytosol, nucleus, peroxisome	55.68	28.99
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	54.55	28.83
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	55.68	28.66
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	56.25	28.61
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	53.98	28.53
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	54.55	28.49
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	53.41	28.23
CDX79411	Canola	plastid	53.41	28.06
EES16336	Sorghum	cytosol, golgi, peroxisome	46.59	22.78
PGSC0003DMT400006784	Potato	cytosol	32.95	19.21

Protein Annotations

EnsemblPlants:Solyc03g120520.1.1	EnsemblPlantsGene:Solyc03g120520.1	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
PANTHER:PTHR45174	PFAM:PF00097	PFscan:PS50089	ScanProsite:PS00518	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002766D65	UniProt:K4BMK1	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:+:68893991..68898279

Molecular Weight (calculated)

19719.9 Da

IEP (calculated)

9.222

GRAVY (calculated)

-0.172

Length

176 amino acids

Sequence
(BLAST)

001: MKMNLRYRDE RAVEVRGKVH NTNRSFTFRH MLVQKGFGGR GLTVAQKIWY CVATVGGKCM LARLQSFSAF RRWGNSEQEL LLLLLPVLNS SSIKNFLLPF
101: SKDKSSDSSV DDTLCSICQG NPTIPFLAIP CQHSYCYYCL QTRCSAAPSF HCPQCGESIA AMQRHGGSVN NISQIQ

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.