Factsheet for Solyc06g066570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	98.3	99.14
Solyc12g027700.1.1	Tomato	extracellular	11.33	83.33
KRH44319	Soybean	plastid	75.64	80.91
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	66.57	78.86
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	77.05	78.61
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	66.01	78.19
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	66.86	76.62
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	69.41	73.57
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	68.84	72.97
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	68.84	72.97
KRH47250	Soybean	cytosol, nucleus, peroxisome	75.07	72.8
KRH75574	Soybean	endoplasmic reticulum, extracellular	36.26	72.32
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	35.98	72.16
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	68.84	72.11
CDY70404	Canola	cytosol, nucleus, peroxisome	46.74	72.05
CDX79411	Canola	plastid	68.27	71.94
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	69.69	71.93
KXG24014	Sorghum	cytosol, nucleus, peroxisome	68.84	71.89
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	67.99	69.36
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	69.41	66.94
EES16336	Sorghum	cytosol, golgi, peroxisome	64.59	63.33

Protein Annotations

MapMan:23.4.1.4.1	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4C7T2	PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR45174	InterPro:Pex_N	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g066570.2
EnsemblPlants:Solyc06g066570.2.1	UniParc:UPI0002765DAB	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:41815317..41821991

Molecular Weight (calculated)

40222.7 Da

IEP (calculated)

9.738

GRAVY (calculated)

-0.222

Length

353 amino acids

Sequence
(BLAST)

001: MDRQNLASSS APRGGATVHP PPQHDAWINT YRNLHPQWQS LLPPPQQSAI PISISRVNQV DAGRLDIEMS AMLKEQLVKV FSLMKPGMLF QYEPELDAFL
101: EFLIWRFSIW VDKPTPGNAL MNLRYRDERA SEIRGKVRTG LEGPGLTVAQ KIWYCVATVG GQYIWARLQS FSAFRRWGDS EQRSLARGVW LLMQRMEGIY
201: KAASFSNLLL FLYTGRFRNL IERALRARLV YGSPNMNRAV SFEYMNRQLV WNEFSELLLL LLPLLNSASV KSFLRPFSKD KSSDSSVDET LCPICQGTPS
301: IPFVAIPCQH RYCYYCLQTR CSASSSFRCP RCGEPVAAMQ RHGGLVSNIP QKQ

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.