Factsheet for Zm00001d031028_P004

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d027514_P002
Zm00001d029782_P004
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d047373_P001
Zm00001d048343_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	Zm00001d027514_P002	AT2G17200.1	23336935
AT1G79810.1	Zm00001d029782_P004	AT2G17200.1	23336935
AT1G79810.1	Zm00001d047373_P001	AT2G17200.1	23336935
AT1G79810.1	Zm00001d048343_P001	AT2G17200.1	23336935
AT1G79810.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G79810.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G79810.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G79810.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	79.23	89.6
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	78.64	88.93
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	79.53	87.01
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	85.46	84.21
EES16336	Sorghum	cytosol, golgi, peroxisome	85.76	80.28
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	80.71	78.61
KRH44319	Soybean	plastid	70.92	72.42
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	70.03	70.87
Solyc12g027700.1.1	Tomato	extracellular	10.09	70.83
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	69.14	69.97
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	69.14	69.97
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	72.11	69.43
CDX79411	Canola	plastid	68.84	69.25
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	72.11	68.84
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	70.62	68.79
CDY70404	Canola	cytosol, nucleus, peroxisome	46.59	68.56
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	74.18	68.31
KRH47250	Soybean	cytosol, nucleus, peroxisome	71.22	65.93
KRH75574	Soybean	endoplasmic reticulum, extracellular	33.53	63.84
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	28.49	54.55
PGSC0003DMT400006784	Potato	cytosol	37.98	42.38

Protein Annotations

EntrezGene:100193229	MapMan:23.4.1.4.1	Gene3D:3.30.40.10	UniProt:B4FCL8	EMBL:BT034856	EMBL:EU964713
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005829	GO:GO:0006464	GO:GO:0006513
GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0007031	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009506	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791
GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM02011.1	ProteinID:ONM02015.1	PFAM:PD124462	PFAM:PF00097
PFAM:PF04757	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR45174	InterPro:Pex_N	SUPFAM:SSF57850
UniParc:UPI00017B6744	EnsemblPlantsGene:Zm00001d031028	EnsemblPlants:Zm00001d031028_P004	EnsemblPlants:Zm00001d031028_T004	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

Peroxisome biogenesis protein 2

Coordinates

chr1:+:174127562..174133045

Molecular Weight (calculated)

38322.4 Da

IEP (calculated)

9.328

GRAVY (calculated)

-0.109

Length

337 amino acids

Sequence
(BLAST)

001: MPQVESATAS EAPPPQDAWL VELGSRLPQW ESLRDSSKVI IPISISRVNQ FDAARLDVEM SAMLKEQLVK VFSLMKPGLL FQYEPELDAF LEFLIWRFSI
101: WADKPTPGNA LMNLRYRDER AAPITGKEVR TGLEGPGLSV SQKIFYCISF VGGQYVWSRL QSFSAFRRWG DSEQRPLARR AWALMRNAEV FYRAASFFNL
201: LLFLYGGRYK TVVERILKAR LVYGSPNMNR AVSFEYMNRQ LVWNEFSEML LLLLPLLNSS SVKKFLLPFS KDKSGGSSGD EADCPICRSS PSIPFIALPC
301: QHRYCYYCLR TRCSATTSYR CTRCDGAVVA IQRLGSG

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.