CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71349
CDX88001
CDY07870
CDY24170
CDY26796
CDY31374
CDY36943
CDY47488

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	CDX71349	AT2G17200.1	23336935
AT1G79810.1	CDX88001	AT2G17200.1	23336935
AT1G79810.1	CDY07870	AT2G17200.1	23336935
AT1G79810.1	CDY26796	AT2G17200.1	23336935
AT1G79810.1	CDY31374	AT2G17200.1	23336935
AT1G79810.1	CDY47488	AT2G17200.1	23336935
AT1G79810.1	CDY24170	AT3G47620.1	21798944
AT1G79810.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	100.0	68.77
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	99.56	68.47
CDX79411	Canola	plastid	99.56	68.06
KRH75574	Soybean	endoplasmic reticulum, extracellular	52.4	67.8
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	95.2	65.47
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	72.05	55.37
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	71.18	54.7
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	41.48	53.98
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	72.05	53.57
KRH44319	Soybean	plastid	75.98	52.73
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	75.55	50.0
Solyc12g027700.1.1	Tomato	extracellular	10.48	50.0
KRH47250	Soybean	cytosol, nucleus, peroxisome	76.42	48.08
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	72.05	47.69
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	72.05	47.14
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	69.87	46.78
KXG24014	Sorghum	cytosol, nucleus, peroxisome	69.0	46.75
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	72.05	46.74
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	68.56	46.59
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	72.05	45.08
EES16336	Sorghum	cytosol, golgi, peroxisome	61.14	38.89
PGSC0003DMT400006784	Potato	cytosol	35.37	26.82

Protein Annotations

MapMan:23.4.1.4.1	Gene3D:3.30.40.10	GO:A0A078JUE2	UniProt:A0A078JUE2	EnsemblPlants:CDY70404	ProteinID:CDY70404
ProteinID:CDY70404.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00003158001	InterPro:IPR001841
InterPro:IPR013083	PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR45174	InterPro:Pex_N	SUPFAM:SSF57850	UniParc:UPI0004EDEE7A	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

BnaAnng33560DBnaAnng33560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUE2]

Coordinates

chrLK041998:-:753..3212

Molecular Weight (calculated)

26196.8 Da

IEP (calculated)

10.029

GRAVY (calculated)

-0.176

Length

229 amino acids

Sequence
(BLAST)

001: MNLRYRDERV AAQLSGKVRT GLEGPGLTAP QKIWYCVASV GGQYLFSRLQ SFSAFRRWGD SEQRPLARRL WTLVQRIEGI YKAASFLNLL SFLYTGRYRN
101: LIEKALRARL VYRSPHMNRS VSFEYMNRQL VWNEFSEMLL LLLPLLNSSA IKNILSPFAK ESSSSNKEDT VACPICQVDP ATPFIALPCQ HRYCYYCIRT
201: RCASAASFRC LRCNEPVVAI QREGVSSGK

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.