Factsheet for GSMUA_Achr10P14960_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02760_001
GSMUA_Achr1P02770_001
GSMUA_Achr1P14990_001
GSMUA_Achr3P00530_001
GSMUA_Achr4P00500_001
GSMUA_Achr5P11110_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P04060_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	GSMUA_Achr1P02760_001	AT2G17200.1	23336935
AT1G79810.1	GSMUA_Achr1P02770_001	AT2G17200.1	23336935
AT1G79810.1	GSMUA_Achr1P14990_001	AT2G17200.1	23336935
AT1G79810.1	GSMUA_Achr3P00530_001	AT2G17200.1	23336935
AT1G79810.1	GSMUA_Achr5P11110_001	AT2G17200.1	23336935
AT1G79810.1	GSMUA_Achr7P04060_001	AT2G17200.1	23336935
AT1G79810.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G79810.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G79810.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G79810.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	68.03	83.56
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	67.49	82.89
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	67.76	80.52
KXG24014	Sorghum	cytosol, nucleus, peroxisome	69.67	75.44
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	69.67	74.56
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	68.31	74.18
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	69.95	73.99
KRH44319	Soybean	plastid	66.12	73.33
Solyc12g027700.1.1	Tomato	extracellular	9.56	72.92
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	68.85	72.83
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	65.57	72.07
CDY70404	Canola	cytosol, nucleus, peroxisome	45.08	72.05
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	65.3	71.77
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	65.03	71.47
CDX79411	Canola	plastid	65.3	71.34
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	66.94	70.0
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	66.94	69.41
KRH47250	Soybean	cytosol, nucleus, peroxisome	66.39	66.76
KRH75574	Soybean	endoplasmic reticulum, extracellular	31.97	66.1
EES16336	Sorghum	cytosol, golgi, peroxisome	63.66	64.72
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	29.23	60.8
PGSC0003DMT400006784	Potato	cytosol	36.34	44.04

Protein Annotations

MapMan:23.4.1.4.1	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005829
GO:GO:0006464	GO:GO:0006513	GO:GO:0006629	GO:GO:0006635	GO:GO:0006810	GO:GO:0007031
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009506	GO:GO:0009628
GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016558	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G14960_001	EnsemblPlants:GSMUA_Achr10P14960_001	EnsemblPlants:GSMUA_Achr10T14960_001	InterPro:IPR001841
InterPro:IPR013083	UniProt:M0RIC2	PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR45174	InterPro:Pex_N	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002952330
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

Peroxisome assembly protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G14960_001]

Coordinates

chr10:-:23037912..23045968

Molecular Weight (calculated)

41921.2 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.260

Length

366 amino acids

Sequence
(BLAST)

001: MPLDRATLAS SGRSVDSSSL SFPSSDPPSE YSWVEEYQRS YPRWKSLRDS FQLPIQVTTS RVNQFDAARL DVEMSAMLKE QLVRVFSLMK PGFLFQYEPE
101: LDAFLEFLIW RFSIWVDKPT PGNALMNLRY RDERAVPVGG KAVRTGLEGP GLSVSQKIWY CLTTVGGQYL WSRVQSFSAF RRWGDSEQRS LARQSWLLLQ
201: RIEGLYKAAS FCNLLIFLYS GRYRSIIERV LRARLVYGNP NMNRAVSFEY MNRQLVWNEF SEMLLLLLPL LNSSSVKRFL LPFSKNKSSD SSGNEAECPI
301: CQSNPTIPFL ALPCQHRYCY YCLRTRCAAA SSYHCARCNA VVIAIQRHGS SETKPSNLGD IRESSN

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.