Factsheet for GSMUA_Achr1P14990_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr2P19900_001
GSMUA_Achr4P25580_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00530_001	Banana	cytosol	81.95	82.1
GSMUA_Achr7P04060_001	Banana	cytosol	74.73	75.96
GSMUA_Achr5P11110_001	Banana	cytosol	59.57	61.91
VIT_03s0038g03680.t01	Wine grape	cytosol	63.36	60.52
Solyc02g082800.2.1	Tomato	plastid	59.57	59.67
PGSC0003DMT400003987	Potato	cytosol	59.39	59.6
Solyc03g032160.2.1	Tomato	plastid	59.39	59.07
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.83	58.24
KRH07920	Soybean	cytosol	56.86	58.23
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	54.15	58.14
KRH69678	Soybean	nucleus	56.86	57.8
KRH76549	Soybean	cytosol	56.32	57.67
KRH28904	Soybean	cytosol	55.96	57.3
CDY26796	Canola	cytosol	53.61	56.14
CDX88001	Canola	cytosol	54.69	55.9
CDY47488	Canola	cytosol	52.35	55.24
Bra009657.1-P	Field mustard	cytosol	54.69	54.89
AT2G17200.1	Thale cress	cytosol	54.51	54.81
AT2G17190.1	Thale cress	cytosol	53.07	54.65
CDY07870	Canola	cytosol	53.07	54.65
Bra037281.1-P	Field mustard	cytosol	53.43	54.61
CDY31374	Canola	cytosol, plastid	52.53	54.29
CDX71349	Canola	cytosol	53.61	54.2
Bra002028.1-P	Field mustard	cytosol, plastid	53.43	53.82
KRH07807	Soybean	cytosol, mitochondrion, nucleus	6.5	53.73
CDX75489	Canola	cytosol	49.46	53.1
PGSC0003DMT400048093	Potato	extracellular	7.76	53.09
Bra011602.1-P	Field mustard	cytosol	42.96	52.08
PGSC0003DMT400045106	Potato	cytosol	40.43	48.28
Solyc02g060600.1.1	Tomato	cytosol	21.84	43.06
Solyc02g061720.1.1	Tomato	cytosol	26.17	42.9
Solyc02g060580.1.1	Tomato	cytosol	23.47	42.48
Solyc02g061680.1.1	Tomato	cytosol	37.0	42.44
Solyc02g061670.1.1	Tomato	cytosol	26.71	42.17
Solyc02g061710.1.1	Tomato	nucleus	18.41	41.63
GSMUA_Achr1P02760_001	Banana	cytosol	9.57	41.09
Solyc02g061610.1.1	Tomato	cytosol	36.46	40.56
Solyc02g060590.1.1	Tomato	cytosol	9.75	40.3
Solyc02g061640.1.1	Tomato	cytosol	9.21	38.06
CDX69126	Canola	nucleus	43.5	33.43
Solyc02g060570.1.1	Tomato	cytosol	38.09	29.76

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr1G14990_001	EnsemblPlants:GSMUA_Achr1P14990_001	EnsemblPlants:GSMUA_Achr1T14990_001	InterPro:IPR000626	InterPro:IPR015940	UniProt:M0S007
PFAM:PF00240	PFAM:PF00627	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10677	PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000294DD04	InterPro:Ubiquilin
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:

Description

Putative Ubiquilin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14990_001]

Coordinates

chr1:+:11304534..11309394

Molecular Weight (calculated)

58911.5 Da

IEP (calculated)

4.588

GRAVY (calculated)

-0.427

Length

554 amino acids

Sequence
(BLAST)

001: MGTDGDSCGA GDSDAVGGCA AVTVHVRCSN GSKFSVQIAL DSTVGAFKAA LVEKCDVPAE QQRLIYKGRI LKDEHTLESY GLESDHTIHL VRGLTSPAAS
101: ADVTTASNGA SRIPANSAGV ENGGTNEGRR FGGADIGGSL FPGLGVNRRD GNGSGFLGFG LPDINQMQQQ LAQNPSMMRE IMNMPAVQSL MNNPDLLRNM
201: IMNNPQMREI IDRNPDFAHV LNDPSTLRQS LEVMRNPELM RELMRNTDRA MSNIEASPEG FNALRRMYET VQEPFLNATT GSGNMGNDLA QNPFAALLGN
301: QSASQARGQT ANQSGTGSDV TTESAAPNSN PLPNPWSSTA GGAQSTNSRP VPANDGRSPG VAGLGGLGLP DLERMAGGMP DPSLMNQLLQ NPAIMQMMQS
401: LLSNPQFMNQ VLDPQLGGML GSNSQLRDML QNPELIRQLT SPETLQQLLS FQQSLVSQVV RQQSSQEQNQ TGGGTAGTMN NNGLELLMNM FGGLGSGAGV
501: PSNPDVPPEE RYATQLSQLQ EMGFLNTQEN IRALSATSGN VHAAVDWLLR NLDR

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.