Factsheet for VIT_04s0210g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07807	Soybean	cytosol, mitochondrion, nucleus	8.91	68.66
Solyc03g032160.2.1	Tomato	plastid	64.73	59.96
PGSC0003DMT400048093	Potato	extracellular	9.3	59.26
VIT_03s0038g03680.t01	Wine grape	cytosol	66.09	58.79
Solyc02g082800.2.1	Tomato	plastid	62.98	58.77
KRH76549	Soybean	cytosol	60.85	58.04
PGSC0003DMT400003987	Potato	cytosol	62.02	57.97
KRH07920	Soybean	cytosol	60.66	57.86
KRH28904	Soybean	cytosol	60.47	57.67
KRH69678	Soybean	nucleus	60.08	56.88
GSMUA_Achr1P14990_001	Banana	cytosol	58.14	54.15
GSMUA_Achr5P11110_001	Banana	cytosol	55.62	53.85
GSMUA_Achr3P00530_001	Banana	cytosol	57.56	53.71
EER92919	Sorghum	cytosol	52.33	50.19
Os03t0131300-01	Rice	plasma membrane	51.55	49.81
GSMUA_Achr7P04060_001	Banana	cytosol	51.94	49.17
Zm00001d027514_P002	Maize	cytosol	50.97	49.07
TraesCS4B01G325900.2	Wheat	cytosol	50.58	49.06
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	43.02	48.79
Zm00001d048343_P001	Maize	cytosol	50.19	48.59
TraesCS1D01G206500.1	Wheat	cytosol	52.13	47.7
TraesCS1B01G217000.1	Wheat	cytosol	52.33	47.54
HORVU4Hr1G082050.15	Barley	cytosol	49.03	47.38
TraesCS1A01G203000.1	Wheat	cytosol	51.94	47.18
PGSC0003DMT400045106	Potato	cytosol	41.47	46.12
Os10t0542200-01	Rice	plasma membrane, plastid	51.36	46.09
EER92003	Sorghum	cytosol	51.36	45.69
Zm00001d047373_P001	Maize	cytosol	50.97	45.66
Solyc02g060590.1.1	Tomato	cytosol	11.82	45.52
TraesCS5A01G498100.1	Wheat	cytosol	49.81	45.25
TraesCS4D01G322800.1	Wheat	cytosol	49.61	45.07
Zm00001d029782_P004	Maize	cytosol	50.78	44.18
HORVU1Hr1G052260.2	Barley	cytosol	48.06	43.43
Solyc02g061640.1.1	Tomato	cytosol	11.05	42.54
Solyc02g061710.1.1	Tomato	nucleus	19.77	41.63
Solyc02g060580.1.1	Tomato	cytosol	24.03	40.52
Solyc02g061670.1.1	Tomato	cytosol	26.16	38.46
Solyc02g060600.1.1	Tomato	cytosol	20.74	38.08
Solyc02g061680.1.1	Tomato	cytosol	35.47	37.89
Solyc02g061720.1.1	Tomato	cytosol	24.61	37.57
Solyc02g061610.1.1	Tomato	cytosol	36.05	37.35
GSMUA_Achr1P02760_001	Banana	cytosol	9.3	37.21
Solyc02g060570.1.1	Tomato	cytosol	37.98	27.64

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	ProteinID:CCB61048.1	ncoils:Coil	UniProt:F6I281
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	PFAM:PF00240
PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGR:TC70199
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000210A819	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
ArrayExpress:VIT_04s0210g00220	EnsemblPlantsGene:VIT_04s0210g00220	EnsemblPlants:VIT_04s0210g00220.t01	unigene:Vvi.20125	SEG:seg	:

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6I281]

Coordinates

chr4:+:20609458..20620981

Molecular Weight (calculated)

50290.1 Da

IEP (calculated)

4.368

GRAVY (calculated)

-0.382

Length

516 amino acids

Sequence
(BLAST)

001: MGGDGVAGDA SESNAGGGVT VHVRCSNGSK FSVQISLEST VRAFKAVLSQ NCDIPAEQQR LIYKGRILKD DQTLESYGLE ADHTVHLVRG FAPPAPADKA
101: GPADSGRPNT TPPSIPMDAG LNEGGALGGS GFGASLFPGL GINGLGGTGG LFGAGLPEFE QMQQQLTXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XTDRAMSNIE SSPEGFNMLR RMYETVQEPF LNATTMSGDS GSDLGSNPFA ALLGTQGGVQ AHDRSANPPT AGSDTTNNSP APNTNPLPNP WTPGGGGAGG
301: AQTNTTTRSN PVGDARTPTP SGLGGLGLPE LESMFGSMPD TNSLNQIMQN PAISQMMQSL LSSPQYMNQI LGLNPQLRSV LDSNPQLREM MQNPEFLRQL
401: TSPETMQQFL TLQQSLLSQL GRQQSSQESG QTGGGTGGML NNMGLEMLMN MFGGLGAGSM NIPSRSDVPP EQLYATQLSQ LQEMGFFDTQ ENIRALTATA
501: GNVHAAVERL LGNPGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.