Factsheet for TraesCS1A01G203000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G110900.1
TraesCS1D01G203800.1
TraesCS2A01G245600.1
TraesCS2B01G143000.1
TraesCS2B01G427400.1
TraesCS3A01G305600.1
TraesCS3B01G330900.1
TraesCS3D01G296300.1
TraesCS4A01G071300.2
TraesCS4A01G427300.1
TraesCS4A01G428300.1
TraesCS4B01G227200.2
TraesCS4D01G227900.2
TraesCS5B01G340700.1
TraesCS7A01G061500.1
TraesCS7A01G284100.1
TraesCS7A01G303900.1
TraesCS7B01G204300.2
TraesCS7D01G056400.1
TraesCS7D01G299400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	TraesCS7A01G303900.1	AT1G79810.1	23336935
AT2G17190.1	TraesCS7B01G204300.2	AT1G79810.1	23336935
AT2G17190.1	TraesCS7D01G299400.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS7A01G303900.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS7B01G204300.2	AT1G79810.1	23336935
AT2G17200.1	TraesCS7D01G299400.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS1B01G110900.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS1D01G203800.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2A01G245600.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2B01G143000.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2B01G427400.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3A01G305600.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3B01G330900.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3D01G296300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G427300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G428300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS5B01G340700.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7A01G061500.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7A01G284100.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7D01G056400.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G071300.2	AT4G38630.1	20059542
AT2G17200.1	TraesCS4B01G227200.2	AT4G38630.1	20059542
AT2G17200.1	TraesCS4D01G227900.2	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G217000.1	Wheat	cytosol	98.94	98.94
TraesCS1D01G206500.1	Wheat	cytosol	97.36	98.05
HORVU1Hr1G052260.2	Barley	cytosol	90.49	90.02
Os10t0542200-01	Rice	plasma membrane, plastid	79.23	78.26
EER92003	Sorghum	cytosol	77.99	76.38
Zm00001d047373_P001	Maize	cytosol	76.76	75.69
Zm00001d029782_P004	Maize	cytosol	74.82	71.67
KRH07807	Soybean	cytosol, mitochondrion, nucleus	7.92	67.16
TraesCS5A01G498100.1	Wheat	cytosol	63.2	63.2
GSMUA_Achr5P11110_001	Banana	cytosol	58.45	62.29
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	48.06	60.0
PGSC0003DMT400048093	Potato	extracellular	8.45	59.26
KRH76549	Soybean	cytosol	55.63	58.41
Solyc02g082800.2.1	Tomato	plastid	56.87	58.41
PGSC0003DMT400003987	Potato	cytosol	56.51	58.15
KRH28904	Soybean	cytosol	54.93	57.67
Solyc03g032160.2.1	Tomato	plastid	56.34	57.45
KRH07920	Soybean	cytosol	54.58	57.3
CDX88001	Canola	cytosol	54.4	57.01
AT2G17200.1	Thale cress	cytosol	55.28	56.99
CDY31374	Canola	cytosol, plastid	53.7	56.9
Bra009657.1-P	Field mustard	cytosol	55.28	56.88
Bra002028.1-P	Field mustard	cytosol, plastid	54.93	56.73
CDY26796	Canola	cytosol	52.82	56.71
VIT_03s0038g03680.t01	Wine grape	cytosol	57.75	56.55
AT2G17190.1	Thale cress	cytosol	53.52	56.51
KRH69678	Soybean	nucleus	54.05	56.33
CDY07870	Canola	cytosol	53.35	56.32
CDY47488	Canola	cytosol	51.94	56.19
Bra037281.1-P	Field mustard	cytosol	53.52	56.09
CDX75489	Canola	cytosol	50.7	55.81
CDX71349	Canola	cytosol	53.52	55.47
Bra011602.1-P	Field mustard	cytosol	43.31	53.83
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	47.18	51.94
Solyc02g060600.1.1	Tomato	cytosol	22.36	45.2
PGSC0003DMT400045106	Potato	cytosol	36.8	45.04
Solyc02g060580.1.1	Tomato	cytosol	23.59	43.79
Solyc02g061670.1.1	Tomato	cytosol	25.88	41.88
Solyc02g061720.1.1	Tomato	cytosol	24.3	40.83
Solyc02g061680.1.1	Tomato	cytosol	32.92	38.72
Solyc02g061710.1.1	Tomato	nucleus	16.55	38.37
Solyc02g061610.1.1	Tomato	cytosol	32.57	37.15
Solyc02g060590.1.1	Tomato	cytosol	8.63	36.57
Solyc02g061640.1.1	Tomato	cytosol	8.27	35.07
GSMUA_Achr1P02760_001	Banana	cytosol	7.75	34.11
CDX69126	Canola	nucleus	43.13	33.98
Solyc02g060570.1.1	Tomato	cytosol	34.51	27.64

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:TraesCS1A01G203000	EnsemblPlants:TraesCS1A01G203000.1
InterPro:UBA	InterPro:UBA-like_sf	InterPro:Ubiquilin	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	TIGR:cd14399	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:-:364226204..364230499

Molecular Weight (calculated)

58373.3 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.326

Length

568 amino acids

Sequence
(BLAST)

001: MGGAGDGEGA GSESPPSGAR ATLNIRCANG AKFTLQADLG ETVGAFKEAV AASCDVPAPQ QRLIYKGRIL KDEQTLESYG VETDHTIHLV RGVAQPAASG
101: APAASSPQAS TTPTSGPAGG LGGLFPGLGA TGAASGRPAG LFGAGLPELD QMQQQLSQNP NLMREIMNMP MMQSLMNNPD LIRNMIMNNP QMRDIIDRNP
201: DLAHVLNDPS VLRQTLEAAR NPEIMREMMR NTDRAMSNIE ASPEGFNMLR RMYETVQEPF LNATTMGGGG EGTPASNPFA ALLGNQGPNQ AGNAATNAPI
301: TGPESTTGTP VPNTNPLPNP WSNNAGGAQG TPRSGPAAST RAGATGGPGG LGSADLSSLL GGLGGNARTG AAGGLGGLGS ADLGSMLGGP PDAALLSQML
401: QNPAMMQMMQ NIMSDPQSMN QLLSMNPNAR SLMESNTQLR DMFQNPEFLR QMASPEALQQ LLSLQQTMSS QLGQNQPSQA GNLGGNGTGT RGNVGLDTLM
501: GMLSGLGAGG GLGVPNASNV PPEELYATQL GQLQEMGFFD TAENIRALMA TSGNVHAAVE RLLGNFGQ

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.