Factsheet for Solyc02g082800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003987	Potato	cytosol	96.56	96.74
Solyc03g032160.2.1	Tomato	plastid	77.58	77.02
KRH76549	Soybean	cytosol	64.74	66.17
KRH07807	Soybean	cytosol, mitochondrion, nucleus	7.96	65.67
KRH28904	Soybean	cytosol	64.2	65.62
KRH07920	Soybean	cytosol	63.65	65.06
KRH69678	Soybean	nucleus	62.93	63.85
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	58.77	62.98
GSMUA_Achr5P11110_001	Banana	cytosol	59.67	61.91
GSMUA_Achr3P00530_001	Banana	cytosol	60.22	60.22
GSMUA_Achr1P14990_001	Banana	cytosol	59.67	59.57
Os03t0131300-01	Rice	plasma membrane	57.32	59.36
Zm00001d027514_P002	Maize	cytosol	56.78	58.58
EER92919	Sorghum	cytosol	56.78	58.36
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.56	57.8
TraesCS4B01G325900.2	Wheat	cytosol	55.52	57.71
TraesCS1D01G206500.1	Wheat	cytosol	58.77	57.62
Zm00001d048343_P001	Maize	cytosol	55.52	57.6
Solyc02g060600.1.1	Tomato	cytosol	29.11	57.3
GSMUA_Achr7P04060_001	Banana	cytosol	56.42	57.25
TraesCS1B01G217000.1	Wheat	cytosol	58.77	57.22
TraesCS1A01G203000.1	Wheat	cytosol	58.41	56.87
EER92003	Sorghum	cytosol	59.49	56.72
HORVU4Hr1G082050.15	Barley	cytosol	54.61	56.55
Os10t0542200-01	Rice	plasma membrane, plastid	58.77	56.52
Zm00001d047373_P001	Maize	cytosol	58.77	56.42
Solyc02g060580.1.1	Tomato	cytosol	30.56	55.23
Solyc02g061670.1.1	Tomato	cytosol	34.9	54.99
Zm00001d029782_P004	Maize	cytosol	57.87	53.96
HORVU1Hr1G052260.2	Barley	cytosol	55.7	53.94
TraesCS4D01G322800.1	Wheat	cytosol	55.33	53.87
TraesCS5A01G498100.1	Wheat	cytosol	55.33	53.87
Solyc02g061720.1.1	Tomato	cytosol	32.91	53.85
Solyc02g061610.1.1	Tomato	cytosol	44.67	49.6
Solyc02g060590.1.1	Tomato	cytosol	11.93	49.25
Solyc02g061680.1.1	Tomato	cytosol	42.86	49.07
Solyc02g061710.1.1	Tomato	nucleus	21.7	48.98
Solyc02g061640.1.1	Tomato	cytosol	11.21	46.27
Solyc02g060570.1.1	Tomato	cytosol	46.11	35.97
GSMUA_Achr1P02760_001	Banana	cytosol	7.59	32.56

Protein Annotations

Gene3D:1.10.260.100	Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	UniProt:K4BAF0	PFAM:PF00240	PFAM:PF00627
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF39	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:Solyc02g082800.2	EnsemblPlants:Solyc02g082800.2.1
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002768101	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:46444061..46453606

Molecular Weight (calculated)

58641.5 Da

IEP (calculated)

4.600

GRAVY (calculated)

-0.475

Length

553 amino acids

Sequence
(BLAST)

001: MGGGDTSAAA AKEDNENNAT GDQKVIINVR CSNGSKFTVQ VALDSSVGSF KSTLAQHSDI PAEQQRLIYK GRILKDEQTL TSYGLEADHT VHLVRGFAPA
101: AAVNTASAVN TGNPNANQNA PSDAAPNVGG PFSGSGLGAS LFPGLGSGGG LLGAGLPDFE QVQQQLTQNP NMMRDMLNMP LVQNLMNNPE IIRNMIMNNP
201: QMREIMDRNP ELAHVLNDPA TLRQTMEAAR NPELMREMMR NTDRAMSNIE SSPEGFNMLR RMYENVQEPL LNATTMGGDA RSDVGSNPFA ALLGAQGTGQ
301: GRNQSTNPPT TGSEATANTP APNTNPLPNP WASAGTGAGQ TNTTARSNTA GETRAPPPAG LGGLALPDLE GMLGGMPDAA SLNQMMQNPA VSQMMQSLLS
401: NPQYMNQMLG TNPQLRNMLD SNSHLREMMQ NPEFIRQMTS PETMQQLMTL QQGLLSQLGR QPTNQPGQNV GGAAPDNNMG MEMLMNMFGG LGSGGLGGVP
501: NRSNVPPEEL YATQLAQLQD MGFFDTQENI RALVATAGNV HAAVERLLGN LGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.