Factsheet for GSMUA_Achr7P04060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr2P19900_001
GSMUA_Achr4P25580_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14990_001	Banana	cytosol	75.96	74.73
GSMUA_Achr3P00530_001	Banana	cytosol	75.23	74.14
GSMUA_Achr5P11110_001	Banana	cytosol	56.15	57.41
PGSC0003DMT400003987	Potato	cytosol	57.43	56.7
Solyc02g082800.2.1	Tomato	plastid	57.25	56.42
VIT_03s0038g03680.t01	Wine grape	cytosol	59.45	55.86
Solyc03g032160.2.1	Tomato	plastid	56.7	55.48
KRH07807	Soybean	cytosol, mitochondrion, nucleus	6.79	55.22
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	46.05	55.16
PGSC0003DMT400048093	Potato	extracellular	8.07	54.32
KRH76549	Soybean	cytosol	52.84	53.23
KRH28904	Soybean	cytosol	52.84	53.23
AT2G17190.1	Thale cress	cytosol	52.29	52.97
CDY26796	Canola	cytosol	51.38	52.93
KRH07920	Soybean	cytosol	52.48	52.87
CDX88001	Canola	cytosol	52.11	52.4
KRH69678	Soybean	nucleus	52.29	52.29
CDX75489	Canola	cytosol	49.36	52.13
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	49.17	51.94
AT2G17200.1	Thale cress	cytosol	52.48	51.91
CDY31374	Canola	cytosol, plastid	51.01	51.87
Bra011602.1-P	Field mustard	cytosol	43.3	51.64
CDY47488	Canola	cytosol	49.72	51.62
CDY07870	Canola	cytosol	50.83	51.49
Bra009657.1-P	Field mustard	cytosol	52.11	51.45
Bra037281.1-P	Field mustard	cytosol	50.64	50.92
Bra002028.1-P	Field mustard	cytosol, plastid	51.38	50.91
CDX71349	Canola	cytosol	51.01	50.73
PGSC0003DMT400045106	Potato	cytosol	39.08	45.91
Solyc02g061720.1.1	Tomato	cytosol	27.52	44.38
Solyc02g060600.1.1	Tomato	cytosol	22.75	44.13
Solyc02g061670.1.1	Tomato	cytosol	26.61	41.31
Solyc02g061710.1.1	Tomato	nucleus	18.35	40.82
Solyc02g060580.1.1	Tomato	cytosol	22.2	39.54
Solyc02g061680.1.1	Tomato	cytosol	34.86	39.34
Solyc02g061610.1.1	Tomato	cytosol	34.86	38.15
Solyc02g060590.1.1	Tomato	cytosol	9.17	37.31
GSMUA_Achr1P02760_001	Banana	cytosol	8.44	35.66
Solyc02g061640.1.1	Tomato	cytosol	8.62	35.07
CDX69126	Canola	nucleus	42.57	32.18
Solyc02g060570.1.1	Tomato	cytosol	37.61	28.91

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G04060_001	EnsemblPlants:GSMUA_Achr7P04060_001	EnsemblPlants:GSMUA_Achr7T04060_001	InterPro:IPR000626	InterPro:IPR015940
UniProt:M0TEJ6	PFAM:PF00240	PFAM:PF00627	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00029636E7
InterPro:Ubiquilin	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg

Description

Putative Ubiquilin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G04060_001]

Coordinates

chr7:-:3162409..3168754

Molecular Weight (calculated)

58747.3 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.432

Length

545 amino acids

Sequence
(BLAST)

001: MGADGDPDGT GDSDTVTLQV RCSNGSRFSV EAAIDSTVGT LKAALVEKCD VPAEQQRLIY KGRILKDEQT LQSYGLASNH TIHLIRALTP PAASAEAATA
101: SHEASREPNN TIGVETAVSN EGGQFGGTDS GGMLFRGIGV NRRDGTGSGF LGFGLPELNQ MQQQLAQNPS MMREIMNMPA VQSLMNNPDL IRGMIMNNPQ
201: MREIIDRNPE FAHILNDPST LRQSLEVMRN PELVRELMRN TDRAMSNIES SPEGFNMLRR MYETVQEPFL NATTTAGEMG NDLGQNPFVA LLGNQGATQA
301: GNQTPSQSGT SSDVATESAA PNSNPLPNPW SRTAAQTTNL RSAPASDGRS TGIAGLGGFG LPELERMAGG VPDPSFLNQL LQNPAIMQMM QSLLSNPEFM
401: NQVLSPQLRG LLGSNSQLSD VLQNPELIRQ LTSPETMQQL LSFQQSFLSQ VVRQQPRQEQ NQTSDGTAGV TNNNGLGLLM NMFSGLGSGT GVANNPDVPP
501: EERYATQLTQ LREMGFFDTQ ENIRALSATA GNIYAAVEWL LRNLE

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.