CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67927
CDX72742
CDX79411
CDX90286
CDX97722
CDY12093
CDY22415
CDY30135
CDY70404

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	CDX67927	AT1G79810.1	23336935
AT2G17190.1	CDX79411	AT1G79810.1	23336935
AT2G17190.1	CDY70404	AT1G79810.1	23336935
AT2G17200.1	CDX67927	AT1G79810.1	23336935
AT2G17200.1	CDX79411	AT1G79810.1	23336935
AT2G17200.1	CDY70404	AT1G79810.1	23336935
AT2G17200.1	CDX97722	AT3G16120.1	21798944
AT2G17200.1	CDY30135	AT3G16120.1	21798944
AT2G17200.1	CDX72742	AT4G38630.1	20059542
AT2G17200.1	CDX90286	AT4G38630.1	20059542
AT2G17200.1	CDY12093	AT4G38630.1	20059542
AT2G17200.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47488	Canola	cytosol	91.87	92.57
CDY07870	Canola	cytosol	81.47	80.11
CDY31374	Canola	cytosol, plastid	80.72	79.66
CDX88001	Canola	cytosol	81.1	79.15
CDX71349	Canola	cytosol	81.29	78.47
AT2G17190.1	Thale cress	cytosol	79.4	78.07
AT2G17200.1	Thale cress	cytosol	80.91	77.68
CDX75489	Canola	cytosol	67.67	69.38
VIT_03s0038g03680.t01	Wine grape	cytosol	65.22	59.48
TraesCS4B01G325900.2	Wheat	cytosol	55.95	55.64
GSMUA_Achr5P11110_001	Banana	cytosol	55.95	55.53
HORVU4Hr1G082050.15	Barley	cytosol	55.95	55.43
Zm00001d027514_P002	Maize	cytosol	55.2	54.48
EER92919	Sorghum	cytosol	55.39	54.46
Zm00001d048343_P001	Maize	cytosol	54.63	54.22
GSMUA_Achr1P14990_001	Banana	cytosol	56.14	53.61
Os03t0131300-01	Rice	plasma membrane	53.69	53.18
TraesCS1D01G206500.1	Wheat	cytosol	56.52	53.01
TraesCS1A01G203000.1	Wheat	cytosol	56.71	52.82
TraesCS1B01G217000.1	Wheat	cytosol	56.71	52.82
GSMUA_Achr3P00530_001	Banana	cytosol	55.2	52.8
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	44.99	52.31
TraesCS4D01G322800.1	Wheat	cytosol	56.14	52.29
TraesCS5A01G498100.1	Wheat	cytosol	56.14	52.29
Os10t0542200-01	Rice	plasma membrane, plastid	56.52	52.0
EER92003	Sorghum	cytosol	56.52	51.55
GSMUA_Achr7P04060_001	Banana	cytosol	52.93	51.38
Zm00001d047373_P001	Maize	cytosol	54.63	50.17
HORVU1Hr1G052260.2	Barley	cytosol	54.06	50.09
Zm00001d029782_P004	Maize	cytosol	54.63	48.74
CDX69126	Canola	nucleus	57.66	42.3
GSMUA_Achr1P02760_001	Banana	cytosol	9.26	37.98

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	UniProt:A0A078GN74	EnsemblPlants:CDY26796	ProteinID:CDY26796
ProteinID:CDY26796.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00035733001	InterPro:IPR000626
InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677
PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EDB271	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

BnaC09g09230DBnaC09g09230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN74]

Coordinates

chrLK032194:-:284659..287651

Molecular Weight (calculated)

56101.3 Da

IEP (calculated)

4.603

GRAVY (calculated)

-0.477

Length

529 amino acids

Sequence
(BLAST)

001: MGGEGDSNKP LTAGGALVAV NVRCSNGSKF SVSTSLDSTV EAFKELVAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQG DHTVHMVRGF APSSAPPPPP
101: PSATVTQDNT SNLGESLFPG LGFNPLGGGS LFGAPPDLEQ AQQQLAQNPN MVRDMMNSPA IQNLMNNPEF MRSIIMSNPQ MRDLVDRNPE LGHVLNDPSI
201: LRQTLEAARN PELMREMMRN TDRAMSNIES MPEGFNHLRR MYENVQEPLM NATTMSGNAG SNAASNPFAA LLGNQGVTTT TTTTQGSDGS TNAETGTGNG
301: IPNANPLPNP WGATAGQTNA PGRPNSGGDA RSPGLGGLGG LGGLADSPLG AIPDASQLNQ MLQNPAMSQM MQSMLSNPQY VNQLINLNPQ LRSMLDSHPQ
401: LREMMQNPDL LRQFSSPEMM QQMMSLQQLL SSQNRNTTSQ EPGQTGAAAA GAGNNGGMDL LMNLFGSLGA GGLSGTNQPS VPPEERFATQ LQQLQEMGFY
501: DRAENIRALL ATNGNVNAAV ERLLGSIGQ

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.