Factsheet for HORVU4Hr1G082050.15

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G073190.1
HORVU4Hr1G063820.1
HORVU7Hr1G011400.2
HORVU7Hr1G072200.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	HORVU7Hr1G072200.2	AT1G79810.1	23336935
AT2G17200.1	HORVU7Hr1G072200.2	AT1G79810.1	23336935
AT2G17200.1	HORVU3Hr1G073190.1	AT3G16120.1	21798944
AT2G17200.1	HORVU7Hr1G011400.2	AT3G16120.1	21798944
AT2G17200.1	HORVU4Hr1G063820.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G325900.2	Wheat	cytosol	89.51	89.85
TraesCS5A01G498100.1	Wheat	cytosol	87.45	82.22
TraesCS4D01G322800.1	Wheat	cytosol	86.89	81.69
EER92919	Sorghum	cytosol	79.21	78.62
Zm00001d027514_P002	Maize	cytosol	78.46	78.17
Zm00001d048343_P001	Maize	cytosol	76.4	76.55
Os03t0131300-01	Rice	plasma membrane	76.22	76.22
HORVU1Hr1G052260.2	Barley	cytosol	65.54	61.3
KRH07807	Soybean	cytosol, mitochondrion, nucleus	7.68	61.19
GSMUA_Achr5P11110_001	Banana	cytosol	60.11	60.23
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	48.69	57.14
PGSC0003DMT400048093	Potato	extracellular	8.61	56.79
CDX88001	Canola	cytosol	57.12	56.27
AT2G17190.1	Thale cress	cytosol	56.55	56.13
PGSC0003DMT400003987	Potato	cytosol	57.87	55.98
CDY26796	Canola	cytosol	55.43	55.95
CDY31374	Canola	cytosol, plastid	55.62	55.41
CDY07870	Canola	cytosol	55.81	55.39
KRH76549	Soybean	cytosol	55.99	55.27
AT2G17200.1	Thale cress	cytosol	56.74	54.99
KRH07920	Soybean	cytosol	55.62	54.9
CDX71349	Canola	cytosol	56.18	54.74
Bra002028.1-P	Field mustard	cytosol, plastid	56.37	54.73
Solyc02g082800.2.1	Tomato	plastid	56.55	54.61
Bra009657.1-P	Field mustard	cytosol	56.37	54.53
VIT_03s0038g03680.t01	Wine grape	cytosol	59.18	54.48
CDY47488	Canola	cytosol	53.56	54.48
KRH28904	Soybean	cytosol	54.68	53.97
KRH69678	Soybean	nucleus	55.06	53.95
Bra037281.1-P	Field mustard	cytosol	54.68	53.87
Solyc03g032160.2.1	Tomato	plastid	55.81	53.5
CDX75489	Canola	cytosol	51.69	53.49
Bra011602.1-P	Field mustard	cytosol	44.38	51.86
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	47.38	49.03
Solyc02g060600.1.1	Tomato	cytosol	22.85	43.42
PGSC0003DMT400045106	Potato	cytosol	37.27	42.89
Solyc02g060580.1.1	Tomato	cytosol	23.97	41.83
Solyc02g061670.1.1	Tomato	cytosol	26.4	40.17
Solyc02g061720.1.1	Tomato	cytosol	25.28	39.94
GSMUA_Achr1P02760_001	Banana	cytosol	9.18	37.98
Solyc02g061710.1.1	Tomato	nucleus	17.23	37.55
Solyc02g061680.1.1	Tomato	cytosol	33.15	36.65
Solyc02g061610.1.1	Tomato	cytosol	33.52	35.94
Solyc02g060590.1.1	Tomato	cytosol	8.8	35.07
Solyc02g061640.1.1	Tomato	cytosol	8.43	33.58
CDX69126	Canola	nucleus	45.32	33.56
Solyc02g060570.1.1	Tomato	cytosol	35.77	26.94

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	UniProt:A0A287PW08	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU4Hr1G082050	EnsemblPlants:HORVU4Hr1G082050.15	InterPro:IPR000626	InterPro:IPR015940	PFAM:PF00240
PFAM:PF00627	ScanProsite:PS00299	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000B483915	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:620878548..620887243

Molecular Weight (calculated)

55837.2 Da

IEP (calculated)

4.643

GRAVY (calculated)

-0.373

Length

534 amino acids

Sequence
(BLAST)

001: MGGGEGEAGG EPAAAPATLH IRGTSGNKFA VRADLGATVG EFKALVAESC DVPAPQQRLI YKGRILKDDQ TLASYGVETD HTIHMVRGAA PPATSATPAA
101: ANLGTSTMTP VNTPPAGLGG LFQGFGGTGT AGSGAFGLSG SGLPGLEQMQ QQLTENPNLM REVLNTPAMQ NIMNSPDLIR DLIMNNPQMR ELVDRNPDLA
201: HVLNDPSILR QTVEAARNPE LMREMMRNTD RAMSNIESSP EGFNMLRRMY ETVQEPFMNA TTMGGEGGTN PNPFAALLGN QGSNQARDPT GDAPTTAPAP
301: NTNPLPNPWG ANGSLKSTAG AAQGAARPSG GAAAAARSAT SGGLGGLGSA DLGSMLGGGS DASLLNQVLQ NPTMMQMMQN IISNPQTMNQ LLNMDPNVRN
401: MMESNTQMRE MFQNPEFLRQ LISPESLQQL DSFQQALTSQ RGQQAAGQER TQAGATPGNV NLNSLMSMFS GLGAGGGLGG VPNIPTVPPE ERYATQLAQL
501: QEMGFFDPQE NIRALLATNG NVHAAVERLL GNFG

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.