Factsheet for HORVU4Hr1G063820.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G052260.2
HORVU4Hr1G082050.15
HORVU6Hr1G029720.1
HORVU6Hr1G029760.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	HORVU6Hr1G029720.1	AT1G16190.1	20059542
AT4G38630.1	HORVU6Hr1G029760.4	AT1G16190.1	20059542
AT4G38630.1	HORVU1Hr1G052260.2	AT2G17200.1	20059542
AT4G38630.1	HORVU4Hr1G082050.15	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G227900.2	Wheat	cytosol	78.86	96.76
TraesCS4A01G071300.2	Wheat	cytosol	78.46	96.26
TraesCS4B01G227200.2	Wheat	cytosol	77.85	94.8
Os03t0243300-01	Rice	plasma membrane	71.75	87.81
EER92569	Sorghum	cytosol	69.72	85.54
PGSC0003DMT400009215	Potato	cytosol	59.96	73.2
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	59.76	72.95
GSMUA_Achr4P25580_001	Banana	cytosol	58.94	72.5
Zm00001d028396_P001	Maize	nucleus	66.06	71.9
Zm00001d047941_P001	Maize	cytosol	64.84	70.89
KRH76642	Soybean	cytosol	58.33	70.86
KRH28809	Soybean	nucleus	57.93	70.37
KRH69766	Soybean	cytosol	57.11	69.38
KRH08049	Soybean	cytosol	55.49	68.59
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	54.27	68.29
Bra010735.1-P	Field mustard	cytosol	51.02	65.54
CDX90286	Canola	cytosol, nucleus, plastid	50.0	65.25
CDY12093	Canola	cytosol	49.8	64.99
Bra033573.1-P	Field mustard	cytosol	50.2	64.83
CDY22415	Canola	cytosol	49.39	64.8
AT4G38630.1	Thale cress	cytosol	50.81	64.77
CDX72742	Canola	extracellular	48.58	64.08
GSMUA_Achr11P...	Banana	golgi, vacuole	58.94	62.77
Zm00001d024336_P001	Maize	mitochondrion	11.79	61.05
PGSC0003DMT400058116	Potato	cytosol	43.9	50.7
Solyc03g033430.1.1	Tomato	cytosol	16.06	46.47
Zm00001d040834_P001	Maize	plastid	18.29	45.23
VIT_04s0008g00060.t01	Wine grape	nucleus	7.93	37.86

Protein Annotations

EnsemblPlants:HORVU4Hr1G063820.1	EnsemblPlantsGene:HORVU4Hr1G063820	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465
InterPro:UIM_dom	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	PFAM:PF02809
PFAM:PF13519	PFscan:PS50234	PFscan:PS50330	SEG:seg	SMART:SM00327	SMART:SM00726
SUPFAM:SSF53300	UniParc:UPI000B46B6C4	UniProt:A0A287PCD4	MapMan:19.2.6.2.2.9	:	:

Description

No Description!

Coordinates

chrchr4H:-:534644908..534649132

Molecular Weight (calculated)

51923.7 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.327

Length

492 amino acids

Sequence
(BLAST)

001: VLANKIETRP MVTFFYGSTN QAQQVRKQSG STAGRTEAYQ VSNRFPPQKA IHVHQGDAAN KNSSPLLPLG SVCSPCSPTR TLDCSATHSG ATMVLESTMI
101: CIDNSEWMRN GDYSPSRFQA QADAVNLICG AKTQSNPENT VGVMTMAGKG VRVLVTPTSD LGKILACMHG LEVGAEANLA AAIQVAQLAL KHRQNKRQQQ
201: RIIVFIGSPV KYDKKVLETI GKKLKKNNVA LDVVDFGETD DEKPEKLEAL IAAVNSSDSS HIVHVPPGDH ALSDVLISTP IFTGEEGGSG FAASAAAAAA
301: TGATGYDFGV DPNVDPELAL ALRLSMEEER ARQEAIAKKA AEDNKDQASS STDAIMAEAE LTLNAPADVD ADLLKDDDDA QLLQQALAMS MDEGASGAAA
401: VADAAMAEAA ADDQDLALAL QMSVQDAEAS GQSDMSKVFE DRSFVTSILN SLPGVDPNDP SVKDLLASLH GQGEQEKKDE ADKTDKPEDG KN

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.