Factsheet for Solyc02g083710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	Solyc03g117780.2.1	AT1G16190.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009215	Potato	cytosol	99.5	99.5
KRH76642	Soybean	cytosol	83.37	82.96
VIT_04s0023g03620.t01	Wine grape	cytosol	83.13	82.92
KRH28809	Soybean	nucleus	83.13	82.72
KRH69766	Soybean	cytosol	82.63	82.22
KRH08049	Soybean	cytosol	80.15	81.16
GSMUA_Achr4P25580_001	Banana	cytosol	75.93	76.5
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	71.46	73.66
TraesCS4D01G227900.2	Wheat	cytosol	72.21	72.57
TraesCS4A01G071300.2	Wheat	cytosol	71.96	72.32
Os03t0243300-01	Rice	plasma membrane	71.96	72.14
TraesCS4B01G227200.2	Wheat	cytosol	71.96	71.78
EER92569	Sorghum	cytosol	71.22	71.57
Bra010735.1-P	Field mustard	cytosol	64.27	67.62
Bra033573.1-P	Field mustard	cytosol	63.77	67.45
CDY22415	Canola	cytosol	62.53	67.2
CDX90286	Canola	cytosol, nucleus, plastid	62.78	67.11
CDY12093	Canola	cytosol	62.53	66.84
AT4G38630.1	Thale cress	cytosol	64.02	66.84
CDX72742	Canola	extracellular	61.54	66.49
GSMUA_Achr11P...	Banana	golgi, vacuole	72.95	63.64
Zm00001d028396_P001	Maize	nucleus	69.23	61.73
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	72.95	59.76
Zm00001d047941_P001	Maize	cytosol	66.5	59.56
Solyc03g033430.1.1	Tomato	cytosol	24.81	58.82
Zm00001d024336_P001	Maize	mitochondrion	12.41	52.63
Zm00001d040834_P001	Maize	plastid	18.86	38.19

Protein Annotations

MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0031593	GO:GO:0043161	GO:GO:0043248	InterPro:IPR002035	InterPro:IPR003903
InterPro:IPR036465	UniProt:K4BAN9	PFAM:PF02809	PFAM:PF13519	PFscan:PS50234	PFscan:PS50330
PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327	SMART:SM00726	SUPFAM:SSF53300	EnsemblPlantsGene:Solyc02g083710.2
EnsemblPlants:Solyc02g083710.2.1	InterPro:UIM_dom	UniParc:UPI00027686BB	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr2:-:47010329..47016447

Molecular Weight (calculated)

42696.0 Da

IEP (calculated)

4.204

GRAVY (calculated)

-0.401

Length

403 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPNRFQALA DAVNLICGAK TQSNPENTVG ILTMAGKGVR VLVTPTSDLG KILACMHGLE IGGEMNLAAG IQVAQLALKH
101: RQNKKQQQRI IVFAGSPVKY DKKVLEMIGR KLKKNSVALD VVNFGEDDEG KAEKLEALVA ALNTNDSSHI IHIPPGPNAL SDVLISTPIF TGDGEGGSGF
201: AAAAAAAAAG GVSGYDFGVD PNLDPELALA LRVSMEEERA RQEAAAKKAA EEAGNQEKGE NQSTSQDVAM AENVNAGTSE PESKATDLMD DENALLQQAL
301: AMSMDDSSSN VATRDTDMSE AASEDQDLAL ALQLSVQDST NDQSNPTDMS KLLADQSFVS SILASLPGVD PNDPSVKDLL ASMQGQSEKK DEDNDKEQKE
401: DKK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.