CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09619
KRH23694
KRH44654
KRH47002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	KRH09619	AT1G16190.1	20059542
AT4G38630.1	KRH23694	AT1G16190.1	20059542
AT4G38630.1	KRH44654	AT1G16190.1	20059542
AT4G38630.1	KRH47002	AT1G16190.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08049	Soybean	cytosol	94.81	96.48
KRH76642	Soybean	cytosol	92.35	92.35
KRH28809	Soybean	nucleus	90.62	90.62
VIT_04s0023g03620.t01	Wine grape	cytosol	85.43	85.64
PGSC0003DMT400009215	Potato	cytosol	82.72	83.13
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	82.22	82.63
GSMUA_Achr4P25580_001	Banana	cytosol	76.54	77.5
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	72.84	75.45
Os03t0243300-01	Rice	plasma membrane	71.11	71.64
EER92569	Sorghum	cytosol	70.62	71.32
TraesCS4D01G227900.2	Wheat	cytosol	69.38	70.07
TraesCS4A01G071300.2	Wheat	cytosol	69.38	70.07
TraesCS4B01G227200.2	Wheat	cytosol	69.14	69.31
Bra010735.1-P	Field mustard	cytosol	64.69	68.41
CDX90286	Canola	cytosol, nucleus, plastid	63.21	67.9
Bra033573.1-P	Field mustard	cytosol	63.7	67.72
CDY12093	Canola	cytosol	62.96	67.64
AT4G38630.1	Thale cress	cytosol	64.44	67.62
CDY22415	Canola	cytosol	62.47	67.47
CDX72742	Canola	extracellular	61.73	67.02
GSMUA_Achr11P...	Banana	golgi, vacuole	72.1	63.2
Zm00001d028396_P001	Maize	nucleus	67.65	60.62
PGSC0003DMT400058116	Potato	cytosol	63.21	60.09
Zm00001d047941_P001	Maize	cytosol	65.93	59.33
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	69.38	57.11
Solyc03g033430.1.1	Tomato	cytosol	23.21	55.29
Zm00001d024336_P001	Maize	mitochondrion	11.85	50.53
Zm00001d040834_P001	Maize	plastid	17.53	35.68

Protein Annotations

EntrezGene:100780583	MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	EMBL:ACUP02000729	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G046900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0031593	GO:GO:0043161
GO:GO:0043248	UniProt:I1JCF9	InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465	EnsemblPlants:KRH69766
ProteinID:KRH69766	ProteinID:KRH69766.1	PFAM:PF02809	PFAM:PF13519	PFscan:PS50234	PFscan:PS50330
PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327	SMART:SM00726	SUPFAM:SSF53300	InterPro:UIM_dom
UniParc:UPI0002336D47	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr2:-:4314657..4319744

Molecular Weight (calculated)

43014.3 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.443

Length

405 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRFQAQT DAVNLICGAK TQSNPENTVG VLTMAGKGVR VLVTPTSDLG KILACMHGLE IGGEMNLAAG IQVAQLALKH
101: RQNKKQQQRI IVFAGGPVKH EKKMLEMIGR KLKKNSVALD IVNFGEEDEG KTEKLEALLS AVNNNDTSHI VHVPSGPNAL SDVLISTPIF TGDGEGGSGF
201: AAAAAAAAAG GVSGFEFGVD PNLDPELALA LRVSMEEERA RQEAAAKKAS EDASKQEKDG EQQASPQDTT MTEGASAAAS EAETKRTDLT DDENALLQQA
301: LAMSMDDPTI NHEVRDTDMS EAAAEDPELA LALQLSVEDS SKDSASQSDV SKLLADQSFV SSILASLPGV DPNDPSVKDL LASMQNQSEP QQKNEDKPPN
401: EEEKK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.