Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38630.1 | KRH09619 | AT1G16190.1 | 20059542 |
| AT4G38630.1 | KRH23694 | AT1G16190.1 | 20059542 |
| AT4G38630.1 | KRH44654 | AT1G16190.1 | 20059542 |
| AT4G38630.1 | KRH47002 | AT1G16190.1 | 20059542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28809 | Soybean | nucleus | 97.28 | 97.28 |
| KRH69766 | Soybean | cytosol | 92.35 | 92.35 |
| KRH08049 | Soybean | cytosol | 89.14 | 90.7 |
| VIT_04s0023g03620.t01 | Wine grape | cytosol | 85.68 | 85.89 |
| PGSC0003DMT400009215 | Potato | cytosol | 83.46 | 83.87 |
| Solyc02g083710.2.1 | Tomato | endoplasmic reticulum, extracellular | 82.96 | 83.37 |
| GSMUA_Achr4P25580_001 | Banana | cytosol | 76.54 | 77.5 |
| GSMUA_Achr2P11290_001 | Banana | cytosol, nucleus, plastid | 72.35 | 74.94 |
| EER92569 | Sorghum | cytosol | 71.6 | 72.32 |
| Os03t0243300-01 | Rice | plasma membrane | 71.11 | 71.64 |
| TraesCS4D01G227900.2 | Wheat | cytosol | 70.37 | 71.07 |
| TraesCS4A01G071300.2 | Wheat | cytosol | 70.37 | 71.07 |
| TraesCS4B01G227200.2 | Wheat | cytosol | 70.12 | 70.3 |
| Bra010735.1-P | Field mustard | cytosol | 65.19 | 68.93 |
| CDY12093 | Canola | cytosol | 63.95 | 68.7 |
| Bra033573.1-P | Field mustard | cytosol | 64.44 | 68.5 |
| CDX90286 | Canola | cytosol, nucleus, plastid | 63.7 | 68.44 |
| CDY22415 | Canola | cytosol | 63.21 | 68.27 |
| AT4G38630.1 | Thale cress | cytosol | 64.94 | 68.13 |
| CDX72742 | Canola | extracellular | 62.22 | 67.56 |
| GSMUA_Achr11P... | Banana | golgi, vacuole | 72.84 | 63.85 |
| Zm00001d028396_P001 | Maize | nucleus | 68.4 | 61.28 |
| PGSC0003DMT400058116 | Potato | cytosol | 63.95 | 60.8 |
| Zm00001d047941_P001 | Maize | cytosol | 66.91 | 60.22 |
| HORVU4Hr1G063820.1 | Barley | cytosol, mitochondrion, nucleus | 70.86 | 58.33 |
| Solyc03g033430.1.1 | Tomato | cytosol | 23.95 | 57.06 |
| Zm00001d024336_P001 | Maize | mitochondrion | 12.1 | 51.58 |
| Zm00001d040834_P001 | Maize | plastid | 17.78 | 36.18 |
Protein Annotations
| EntrezGene:100814594 | MapMan:19.2.6.2.2.9 | Gene3D:3.40.50.410 | EMBL:ACUP02000632 | ncoils:Coil | EnsemblPlantsGene:GLYMA_01G165100 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0031593 | GO:GO:0043161 |
| GO:GO:0043248 | UniProt:I1J8K2 | InterPro:IPR002035 | InterPro:IPR003903 | InterPro:IPR036465 | EnsemblPlants:KRH76642 |
| ProteinID:KRH76642 | ProteinID:KRH76642.1 | PFAM:PF02809 | PFAM:PF13519 | PFscan:PS50234 | PFscan:PS50330 |
| PANTHER:PTHR10223 | PANTHER:PTHR10223:SF5 | SMART:SM00327 | SMART:SM00726 | SUPFAM:SSF53300 | InterPro:UIM_dom |
| UniParc:UPI0002336B89 | InterPro:VWF_A | SEG:seg | InterPro:vWFA_dom_sf | : | : |
Description
hypothetical protein
Coordinates
chr1:-:50261609..50267490
Molecular Weight (calculated)
42853.3 Da
IEP (calculated)
4.336
GRAVY (calculated)
-0.391
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLEATMICI DNSEWMRNGD YSPSRFQAQA DAVNLICGAK TQSNPENTVG VLTMAGKGVR VLVTPTSDLG KILACMHGLD IGGEMNLAAG IQVAQLALKH
101: RQNKKQQQRI IVFAGSPVKH EKKMLEMIGR KLKKNSVALD IVNFGEEDEG KTEKLEALLA AVNNNDTSHI VHVPSGPNAL SDVLISTPIF TGDGEGGSGF
201: AAAAAAAAAG GVSGFEFGVD PNLDPELALA LRVSMEEERA RQEAAAKKAA EDAAKQEKGG EQQASSQDAT MTERASAAMS EAENKTSDLM DDENALLQQA
301: LAMSMDDPAI SHDVKDTDMS EASASDPDLA LALQLSIADS TKDQGSQSDM SKLLADQSFV SSILASLPGV DPNDPSVKDL LASMQNQSEP QQKNDDKPSN
401: EEEKK
101: RQNKKQQQRI IVFAGSPVKH EKKMLEMIGR KLKKNSVALD IVNFGEEDEG KTEKLEALLA AVNNNDTSHI VHVPSGPNAL SDVLISTPIF TGDGEGGSGF
201: AAAAAAAAAG GVSGFEFGVD PNLDPELALA LRVSMEEERA RQEAAAKKAA EDAAKQEKGG EQQASSQDAT MTERASAAMS EAENKTSDLM DDENALLQQA
301: LAMSMDDPAI SHDVKDTDMS EASASDPDLA LALQLSIADS TKDQGSQSDM SKLLADQSFV SSILASLPGV DPNDPSVKDL LASMQNQSEP QQKNDDKPSN
401: EEEKK
001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
Arabidopsis Description
RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.