Factsheet for Zm00001d028396_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027514_P002
Zm00001d029782_P004
Zm00001d047373_P001
Zm00001d048343_P001
Zm00001d053738_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	Zm00001d053738_P001	AT1G16190.1	20059542
AT4G38630.1	Zm00001d027514_P002	AT2G17200.1	20059542
AT4G38630.1	Zm00001d029782_P004	AT2G17200.1	20059542
AT4G38630.1	Zm00001d047373_P001	AT2G17200.1	20059542
AT4G38630.1	Zm00001d048343_P001	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92569	Sorghum	cytosol	81.19	91.52
Os03t0243300-01	Rice	plasma membrane	74.11	83.33
TraesCS4A01G071300.2	Wheat	cytosol	71.46	80.55
TraesCS4D01G227900.2	Wheat	cytosol	71.24	80.3
TraesCS4B01G227200.2	Wheat	cytosol	71.46	79.95
Zm00001d047941_P001	Maize	cytosol	77.21	77.56
Zm00001d024336_P001	Maize	mitochondrion	15.71	74.74
GSMUA_Achr4P25580_001	Banana	cytosol	61.5	69.5
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	61.73	69.23
PGSC0003DMT400009215	Potato	cytosol	61.73	69.23
KRH76642	Soybean	cytosol	61.28	68.4
KRH28809	Soybean	nucleus	61.28	68.4
KRH69766	Soybean	cytosol	60.62	67.65
KRH08049	Soybean	cytosol	58.63	66.58
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	57.52	66.5
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	71.9	66.06
Bra010735.1-P	Field mustard	cytosol	53.32	62.92
AT4G38630.1	Thale cress	cytosol	53.54	62.69
CDX90286	Canola	cytosol, nucleus, plastid	51.99	62.33
CDY12093	Canola	cytosol	51.77	62.07
Bra033573.1-P	Field mustard	cytosol	52.21	61.94
CDY22415	Canola	cytosol	51.11	61.6
CDX72742	Canola	extracellular	50.66	61.39
GSMUA_Achr11P...	Banana	golgi, vacuole	61.5	60.17
Zm00001d030290_P001	Maize	cytosol	42.48	55.49
Zm00001d040834_P001	Maize	plastid	22.79	51.76
PGSC0003DMT400058116	Potato	cytosol	45.35	48.12
Solyc03g033430.1.1	Tomato	cytosol	17.7	47.06
VIT_04s0008g00060.t01	Wine grape	nucleus	7.74	33.98

Protein Annotations

EntrezGene:100272940	MapMan:18.12.1	MapMan:19.2.6.2.2.9	Gene3D:2.40.100.10	Gene3D:3.40.50.410	UniProt:A0A1D6JVQ5
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0000502	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002035	InterPro:IPR002130
InterPro:IPR003903	InterPro:IPR029000	InterPro:IPR036465	ProteinID:ONL95878.1	ProteinID:ONL95880.1	PFAM:PF00160
PFAM:PF02809	PFAM:PF13519	PFscan:PS50072	PFscan:PS50234	PFscan:PS50330	PANTHER:PTHR10223
PANTHER:PTHR10223:SF5	SMART:SM00327	SMART:SM00726	SUPFAM:SSF50891	SUPFAM:SSF53300	InterPro:UIM_dom
UniParc:UPI000845469D	InterPro:VWF_A	EnsemblPlantsGene:Zm00001d028396	EnsemblPlants:Zm00001d028396_P001	EnsemblPlants:Zm00001d028396_T001	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 4 homolog

Coordinates

chr1:-:33303345..33310674

Molecular Weight (calculated)

47650.9 Da

IEP (calculated)

4.561

GRAVY (calculated)

-0.221

Length

452 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YAPSRFQAQA DAVNLICGAK TQSNPENTVG VMTMAGKGVR VLVTPTSDLG KILACMHGLE VGAEANLAAA IQVAQLALKH
101: RQNKRQQQRI IAFIGSPVKY DKKVLETIGK KLKKNNVALD IVDFGESDDE KPEKLEALIA AVNSSDSSHI VHIPPGENAL SDVLLSTPIF TGEEGGSGFA
201: ASAAAAAATG ASGFEFGVDP NVDPELALAL RLSMEEERAR QEAIAKKAAE DTSNTEHNNV PSSNSDSVMA EGEPASNAAA GDKEQPKQAL AMSMEGGASG
301: SAAVTDSAMA EAGAVDPDLA LALQMSVQDA NMSSDTDMSK VFEDRTFVSS ILNSLPGVDP NDPSVKDLLA SLHSQGEVPR TAENFLALCA SGYYDSTVFH
401: RNIKGFMGLH LGTKFADEFR ESQGSTLCSA GANSRPNANG SRFFITYAKQ PF

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.