Factsheet for Bra033573.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002028.1-P
Bra009657.1-P
Bra026076.1-P
Bra026728.1-P
Bra037281.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	Bra026076.1-P	AT1G16190.1	20059542
AT4G38630.1	Bra026728.1-P	AT1G16190.1	20059542
AT4G38630.1	Bra002028.1-P	AT2G17200.1	20059542
AT4G38630.1	Bra009657.1-P	AT2G17200.1	20059542
AT4G38630.1	Bra037281.1-P	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22415	Canola	cytosol	98.16	99.73
Bra010735.1-P	Field mustard	cytosol	95.8	95.3
AT4G38630.1	Thale cress	cytosol	94.23	93.01
VIT_04s0023g03620.t01	Wine grape	cytosol	69.03	65.1
KRH76642	Soybean	cytosol	68.5	64.44
KRH28809	Soybean	nucleus	68.24	64.2
PGSC0003DMT400009215	Potato	cytosol	67.72	64.02
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	67.45	63.77
KRH69766	Soybean	cytosol	67.72	63.7
KRH08049	Soybean	cytosol	66.14	63.32
Os03t0243300-01	Rice	plasma membrane	66.14	62.69
TraesCS4D01G227900.2	Wheat	cytosol	65.35	62.09
EER92569	Sorghum	cytosol	65.09	61.85
TraesCS4B01G227200.2	Wheat	cytosol	65.35	61.63
TraesCS4A01G071300.2	Wheat	cytosol	64.83	61.6
GSMUA_Achr4P25580_001	Banana	cytosol	64.57	61.5
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	61.42	59.85
GSMUA_Achr11P...	Banana	golgi, vacuole	64.04	52.81
Zm00001d028396_P001	Maize	nucleus	61.94	52.21
Zm00001d047941_P001	Maize	cytosol	60.1	50.89
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	64.83	50.2
Solyc03g033430.1.1	Tomato	cytosol	21.0	47.06
PGSC0003DMT400058116	Potato	cytosol	52.49	46.95
Zm00001d024336_P001	Maize	mitochondrion	9.71	38.95
VIT_04s0008g00060.t01	Wine grape	nucleus	9.19	33.98
Zm00001d040834_P001	Maize	plastid	14.17	27.14

Protein Annotations

EnsemblPlants:Bra033573.1	EnsemblPlants:Bra033573.1-P	EnsemblPlantsGene:Bra033573	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR003903
InterPro:IPR036465	InterPro:UIM_dom	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5
PFAM:PF02809	PFAM:PF13519	PFscan:PS50234	PFscan:PS50330	SEG:seg	SMART:SM00327
SMART:SM00726	SUPFAM:SSF53300	UniParc:UPI000253F94B	UniProt:M4EXN6	MapMan:19.2.6.2.2.9	:

Description

AT4G38630 (E=2e-141) RPN10, MCB1, ATMCB1, MBP1 | RPN10 (REGULATORY PARTICLE NON-ATPASE 10); peptide receptor

Coordinates

chrA06:+:26158401..26160399

Molecular Weight (calculated)

40137.8 Da

IEP (calculated)

4.165

GRAVY (calculated)

-0.336

Length

381 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEVVGK RLKKNSVSLD VVNFGDDDDQ DKPLKLEALL SSVNNNDGSH IVHVPSGPNA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL WVSMEEERAR QEAAAKKAAD EAGQKDQDGA SASASQETVA RTTEKNAEPM DEDNALLNQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EEATGAGNLL GDQAFISSVL SSLPGVDPND PAVQALLASL PDESKRNEEE ESSSKGEDEK K

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.