Factsheet for Bra026076.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010735.1-P
Bra033573.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	Bra010735.1-P	AT4G38630.1	20059542
AT1G16190.1	Bra033573.1-P	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35071	Canola	cytosol	99.46	99.46
Bra026728.1-P	Field mustard	cytosol	77.51	79.67
AT1G16190.1	Thale cress	cytosol	78.32	78.53
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	11.38	77.78
KRH09619	Soybean	cytosol, nucleus, plasma membrane	36.31	64.42
PGSC0003DMT400036871	Potato	cytosol	63.41	63.76
Solyc03g117780.2.1	Tomato	cytosol	62.33	62.84
KRH47002	Soybean	cytosol, nucleus, plastid	60.7	61.71
KRH23694	Soybean	cytosol	59.62	59.95
KRH44654	Soybean	cytosol, nucleus, plastid	61.25	59.32
VIT_09s0018g01400.t01	Wine grape	cytosol	65.04	58.39
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	68.02	58.37
TraesCS6A01G149500.1	Wheat	cytosol	57.99	58.31
TraesCS6D01G138800.2	Wheat	cytosol	57.72	58.04
Os02t0179300-01	Rice	plasma membrane	57.99	57.99
TraesCS6B01G177400.1	Wheat	cytosol	57.45	57.77
Zm00001d053738_P001	Maize	cytosol	56.37	56.52
EES04633	Sorghum	cytosol	55.56	55.56
GSMUA_Achr4P20500_001	Banana	cytosol	58.54	55.53
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	26.02	55.17
HORVU6Hr1G029760.4	Barley	cytosol	50.95	54.97
GSMUA_Achr1P25580_001	Banana	cytosol	56.37	54.17
Bra028184.1-P	Field mustard	cytosol	50.41	49.21
GSMUA_Achr7P05120_001	Banana	cytosol	36.31	49.08
Bra028408.1-P	Field mustard	cytosol	49.05	47.38
Bra001050.1-P	Field mustard	cytosol	47.43	43.64
Bra008649.1-P	Field mustard	cytosol	29.27	31.4
Bra008647.1-P	Field mustard	cytosol	25.47	26.48
Bra008648.1-P	Field mustard	cytosol	28.18	16.59

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra026076	EnsemblPlants:Bra026076.1
EnsemblPlants:Bra026076.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
UniProt:M4EBB7	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000253F184	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

AT1G16190 (E=1e-149) | DNA repair protein RAD23, putative

Coordinates

chrA06:+:6236815..6239298

Molecular Weight (calculated)

39686.4 Da

IEP (calculated)

4.072

GRAVY (calculated)

-0.354

Length

369 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SRFEIRVLPT DTIMSVKKSI EDSQSKESYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTLP TSTTTSTPSS
101: TTPAAPSTTQ SIAVPAANST LAQVQPAAQS DTNGQTPATL ISGSSVEQRV QQIMEMGGGS WDEETVLRAL RAAYYNLERA VDYLYSGIPE SEDVPLTTIS
201: GVGSGAEHAA PPPASGGPNA SPLDLFPQEA VSDAGAGDLG SLEFLRSNDQ FQQLRSMVNS NPQILQPMLL ELGKQNPQLL RLIQENQAEF VQLLNEPYEG
301: SDGEMDVFDQ PEQEMPNAVN VTPAEQEAIQ RLEAMGFDRA LVIEAFLACD RNEQLAANYL LENSADFED

Best Arabidopsis Sequence Match ( AT1G16190.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED

Arabidopsis Description

RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.