Factsheet for Os02t0179300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0243300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	Os03t0243300-01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G177400.1	Wheat	cytosol	77.24	77.66
TraesCS6A01G149500.1	Wheat	cytosol	77.24	77.66
EES04633	Sorghum	cytosol	77.51	77.51
TraesCS6D01G138800.2	Wheat	cytosol	76.96	77.38
HORVU6Hr1G029760.4	Barley	cytosol	68.29	73.68
Zm00001d053738_P001	Maize	cytosol	73.44	73.64
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	30.62	64.94
KRH09619	Soybean	cytosol, nucleus, plasma membrane	36.59	64.9
Solyc03g117780.2.1	Tomato	cytosol	62.6	63.11
GSMUA_Achr1P25580_001	Banana	cytosol	65.58	63.02
GSMUA_Achr4P20500_001	Banana	cytosol	66.4	62.98
PGSC0003DMT400036871	Potato	cytosol	62.33	62.67
CDY52848	Canola	cytosol	60.43	62.12
Bra026728.1-P	Field mustard	cytosol	60.43	62.12
KRH23694	Soybean	cytosol	61.52	61.85
KRH47002	Soybean	cytosol, nucleus, plastid	60.7	61.71
CDX81753	Canola	cytosol, nucleus, plastid	59.62	60.61
AT1G16190.1	Thale cress	cytosol	59.89	60.05
KRH44654	Soybean	cytosol, nucleus, plastid	61.52	59.58
CDY33351	Canola	cytosol, nucleus, plastid	57.72	59.17
GSMUA_Achr7P05120_001	Banana	cytosol	43.36	58.61
CDY35071	Canola	cytosol	58.27	58.27
AT1G79650.4	Thale cress	cytosol	62.33	58.23
Bra026076.1-P	Field mustard	cytosol	57.99	57.99
CDX79333	Canola	cytosol	59.62	56.7
VIT_09s0018g01400.t01	Wine grape	cytosol	61.79	55.47
Os02t0465000-00	Rice	cytosol	13.28	53.26
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	62.06	53.26
CDX67983	Canola	plastid	60.7	52.34
Os09t0407200-01	Rice	cytosol	47.43	44.64
Os08t0430200-01	Rice	cytosol	47.7	43.35
Os06t0264300-01	Rice	cytosol, nucleus, plastid	48.51	43.34

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EntrezGene:4328500	ProteinID:BAD28007.1
ProteinID:BAF07997.1	ProteinID:BAS77290.1	ProteinID:BAS77291.1	ProteinID:EEE56437.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	EnsemblPlantsGene:Os02g0179300	EnsemblPlants:Os02t0179300-01	PFAM:PF00240
PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621
PANTHER:PTHR10621:SF26	UniProt:Q6ETL3	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI00003CE5A6	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
RefSeq:XP_015622750.1	SEG:seg	:	:	:	:

Description

Rad23Similar to RAD23 protein, isoform II. (Os02t0179300-01);Similar to DNA repair protein RAD23-1. (Os02t0179300-02)

Coordinates

chr2:+:4407991..4412772

Molecular Weight (calculated)

40116.0 Da

IEP (calculated)

4.452

GRAVY (calculated)

-0.536

Length

369 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG TQFEIRVQPN DTIMAVKKII EEIQGKDSYP WGQQLLIHNG KVLKDESTLE ENKVSEVGFL VVMLSKSKAS GSSGALSSLT SSTPLTRQET
101: PADASRAAPQ PLVAPTRTPQ PERPPAEAPS NAYGQAASNL LSGSNLDTTI NQLMEMGGGS WDRDKVQRAL RAAYNNPERA VEYLYSGIPI TAEVAVPAGG
201: QGANTTEPSS TREASLSGIP NASPLNLFPQ GDANDGGGAG GGTLEFLRHN QQFQALREMV HTNPQILQPM LQELSKKNPQ LLRLIQENHD EFLQLINEPF
301: DGADGDFLDQ PDQDEMPHSI NVTPEEQEAI GRLEGMGFDR ARVIEAFFAC DRNEQLAANY LLEHAADED

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.