CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67983	Canola	plastid	83.25	75.47
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	10.31	74.07
CDX81753	Canola	cytosol, nucleus, plastid	68.3	73.0
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	80.41	72.56
CDY52848	Canola	cytosol	65.21	70.47
CDY33351	Canola	cytosol, nucleus, plastid	63.92	68.89
AT1G79650.4	Thale cress	cytosol	70.1	68.86
KRH09619	Soybean	cytosol, nucleus, plasma membrane	36.86	68.75
CDY35071	Canola	cytosol	64.69	68.02
PGSC0003DMT400036871	Potato	cytosol	63.66	67.3
Solyc03g117780.2.1	Tomato	cytosol	61.6	65.3
KRH23694	Soybean	cytosol	61.6	65.12
KRH47002	Soybean	cytosol, nucleus, plastid	59.28	63.36
KRH44654	Soybean	cytosol, nucleus, plastid	61.86	62.99
VIT_09s0018g01400.t01	Wine grape	cytosol	64.43	60.83
TraesCS6D01G138800.2	Wheat	cytosol	56.96	60.22
TraesCS6A01G149500.1	Wheat	cytosol	56.7	59.95
TraesCS6B01G177400.1	Wheat	cytosol	56.44	59.67
Os02t0179300-01	Rice	plasma membrane	56.7	59.62
Zm00001d053738_P001	Maize	cytosol	55.93	58.97
EES04633	Sorghum	cytosol	55.67	58.54
GSMUA_Achr1P25580_001	Banana	cytosol	56.96	57.55
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	25.77	57.47
GSMUA_Achr4P20500_001	Banana	cytosol	57.22	57.07
HORVU6Hr1G029760.4	Barley	cytosol	50.0	56.73
GSMUA_Achr7P05120_001	Banana	cytosol	36.6	52.01
CDY01661	Canola	cytosol	47.42	48.68
CDX74522	Canola	cytosol	47.42	48.42
CDX67404	Canola	cytosol	46.65	47.38
CDY58121	Canola	cytosol	46.39	46.88
CDX74251	Canola	cytosol	45.88	44.39
CDX91998	Canola	cytosol	45.88	44.17
CDY26493	Canola	cytosol	28.09	30.7
CDY26494	Canola	nucleus	21.13	30.48
CDX69474	Canola	cytosol	27.32	29.04
CDY26496	Canola	cytosol	24.48	26.46
CDX69472	Canola	cytosol	22.94	25.07
CDY26495	Canola	cytosol	12.11	24.74
CDX69473	Canola	cytosol	25.77	15.17

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078CVY3	EnsemblPlants:CDX79333
ProteinID:CDX79333	ProteinID:CDX79333.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00132011001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EE2ACA	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

BnaC06g19700D

Coordinates

chrLK031817:-:1415843..1418769

Molecular Weight (calculated)

41912.2 Da

IEP (calculated)

4.248

GRAVY (calculated)

-0.313

Length

388 amino acids

Sequence
(BLAST)

001: MKLTVKTLMG RQFEIRVQSS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSRTA GSSSGQSSTQ PASTTTTTSS
101: TKPAAPSTTQ STAVPASPVT AQEQPAIIFF AFFLPLVLPT APFMFSESFP CLTAQTDTHG QVASSLASGN RLEPLVQQLM DMGGGSWDKE TVTRALRAAH
201: NNPERAVDYL YSGIPETAEV AVAASGAALV PPASGGPNSS PLDLFPQGTV ASAGTGDLGT LEFLRNNDQF QQLRTMVHSN PQILQPMLQE LGKQNPQLLR
301: LIQENQAEFL QLVNEPYEGS DGDADIFDQP EQETPHSINV TQAEQEAIQR LEAMGFDRDL VIEAFLACDR NEELAANYLL ENSGDFAD

Best Arabidopsis Sequence Match ( AT1G79650.4 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAV YAFVFSFAGL AFCPLYGFPK VSMAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY
201: NNPERAVDYL YSGIPQTAEV AVPVPEAQIA GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK
301: QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.