CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72742
CDX90286
CDY12093
CDY22415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38470.1	CDX72742	AT4G38630.1	20059542
AT5G38470.1	CDX90286	AT4G38630.1	20059542
AT5G38470.1	CDY12093	AT4G38630.1	20059542
AT5G38470.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028408.1-P	Field mustard	cytosol	92.67	92.67
CDY58121	Canola	cytosol	92.15	91.67
CDY01661	Canola	cytosol	88.48	89.42
CDX74522	Canola	cytosol	88.74	89.21
AT5G38470.1	Thale cress	cytosol	85.86	86.77
Solyc02g063130.2.1	Tomato	cytosol, extracellular	70.16	69.97
PGSC0003DMT400062159	Potato	cytosol	70.16	69.43
PGSC0003DMT400032941	Potato	cytosol	70.68	69.23
GSMUA_Achr9P15580_001	Banana	cytosol	39.79	68.78
Solyc02g085840.2.1	Tomato	cytosol	69.11	67.87
CDX74251	Canola	cytosol	68.59	65.34
CDX91998	Canola	cytosol	68.32	64.76
GSMUA_Achr5P05860_001	Banana	cytosol	65.18	63.52
Os02t0465000-00	Rice	cytosol	14.92	61.96
GSMUA_Achr3P07380_001	Banana	cytosol	63.35	59.17
Zm00001d037326_P001	Maize	cytosol	60.99	57.96
Os06t0264300-01	Rice	cytosol, nucleus, plastid	62.04	57.38
TraesCS5B01G204000.1	Wheat	cytosol	59.16	57.22
TraesCS5D01G211900.1	Wheat	cytosol	58.64	56.71
KXG19738	Sorghum	cytosol	60.47	56.62
KXG35597	Sorghum	cytosol	58.64	56.28
TraesCS7B01G113500.1	Wheat	cytosol	59.95	56.27
TraesCS7D01G209100.1	Wheat	cytosol	59.95	56.27
Zm00001d045665_P003	Maize	cytosol	60.21	56.1
TraesCS5A01G204200.1	Wheat	cytosol	57.85	55.95
TraesCS7A01G206300.1	Wheat	cytosol	59.42	55.64
Os08t0430200-01	Rice	cytosol	58.9	55.42
Os09t0407200-01	Rice	cytosol	56.28	54.85
HORVU5Hr1G060920.1	Barley	mitochondrion	60.21	53.12
CDY52848	Canola	cytosol	48.95	52.09
CDY33351	Canola	cytosol, nucleus, plastid	48.69	51.67
CDX81753	Canola	cytosol, nucleus, plastid	48.43	50.96
GSMUA_Achr9P15590_001	Banana	cytosol	18.59	50.0
CDY35071	Canola	cytosol	47.64	49.32
HORVU7Hr1G042100.8	Barley	cytosol	52.09	47.38
Zm00001d005732_P001	Maize	cytosol	54.97	47.19
CDX79333	Canola	cytosol	47.38	46.65
CDX67983	Canola	plastid	48.17	42.99
Zm00001d020419_P003	Maize	cytosol	48.43	40.48
CDY26493	Canola	cytosol	35.86	38.59
CDX69474	Canola	cytosol	36.65	38.36
CDY26494	Canola	nucleus	26.7	37.92
CDX69472	Canola	cytosol	33.77	36.34
CDY26496	Canola	cytosol	33.77	35.93
CDY26495	Canola	cytosol	13.87	27.89
CDX69473	Canola	cytosol	34.55	20.03

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078BUN6	EnsemblPlants:CDX67404
ProteinID:CDX67404	ProteinID:CDX67404.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00098489001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EEC62A	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

BnaA07g14440D

Coordinates

chrLK031787:+:32247..34935

Molecular Weight (calculated)

40717.0 Da

IEP (calculated)

4.297

GRAVY (calculated)

-0.258

Length

382 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG TNFEIEVNPA ETISDTKKRI ETLHGAQYPA AQQMLIHQGK VLKDETTLEE NNVVDNSFIV IMLSKAKVSS SGASTASAPA PSATLAQPAQ
101: TVATPQVATP TASVPEPTSG AATVAAPSAA AASTQTDVYG QAASNLVAGN NLESTVQQIL DMGGGSWDRD TVIRALRAAF NNPERAVEYL YSGIPAQAEI
201: PPAPQAPATG GQAANPLAQT QQEATPVPAT GGPNANPLNL FPQGMPAADA GAGAGNLDFL RNSQQFQALR AMVQANPQIL QPMLQELGKQ NPQLVRLIQE
301: HQADFLRLIN EPVEGEENVM EQLEAAMPQA VTVTPEEREA IERLEAMGFD RAMVLEVFFA CNKNEELAAN YLLDHMHEFE EQ

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.