Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01661 | Canola | cytosol | 87.04 | 87.04 |
| CDX74522 | Canola | cytosol | 87.04 | 86.58 |
| Bra028184.1-P | Field mustard | cytosol | 85.98 | 85.98 |
| CDX67404 | Canola | cytosol | 86.77 | 85.86 |
| CDY58121 | Canola | cytosol | 85.19 | 83.85 |
| Bra028408.1-P | Field mustard | cytosol | 84.13 | 83.25 |
| GSMUA_Achr9P15580_001 | Banana | cytosol | 41.01 | 70.14 |
| PGSC0003DMT400032941 | Potato | cytosol | 72.22 | 70.0 |
| PGSC0003DMT400062159 | Potato | cytosol | 71.16 | 69.69 |
| Solyc02g063130.2.1 | Tomato | cytosol, extracellular | 70.37 | 69.45 |
| Solyc02g085840.2.1 | Tomato | cytosol | 70.11 | 68.12 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 66.4 | 64.03 |
| AT3G02540.1 | Thale cress | cytosol | 69.31 | 62.53 |
| GSMUA_Achr3P07380_001 | Banana | cytosol | 65.87 | 60.88 |
| Os02t0465000-00 | Rice | cytosol | 14.81 | 60.87 |
| KXG35597 | Sorghum | cytosol | 59.79 | 56.78 |
| TraesCS5B01G204000.1 | Wheat | cytosol | 59.26 | 56.71 |
| Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 61.9 | 56.66 |
| Zm00001d045665_P003 | Maize | cytosol | 61.38 | 56.59 |
| Zm00001d037326_P001 | Maize | cytosol | 60.05 | 56.47 |
| TraesCS5A01G204200.1 | Wheat | cytosol | 58.99 | 56.46 |
| KXG19738 | Sorghum | cytosol | 60.85 | 56.37 |
| TraesCS7D01G209100.1 | Wheat | cytosol | 60.58 | 56.27 |
| TraesCS5D01G211900.1 | Wheat | cytosol | 58.73 | 56.2 |
| TraesCS7B01G113500.1 | Wheat | cytosol | 60.05 | 55.77 |
| TraesCS7A01G206300.1 | Wheat | cytosol | 60.05 | 55.64 |
| Os08t0430200-01 | Rice | cytosol | 59.52 | 55.42 |
| Os09t0407200-01 | Rice | cytosol | 57.41 | 55.36 |
| HORVU5Hr1G060920.1 | Barley | mitochondrion | 61.9 | 54.04 |
| GSMUA_Achr9P15590_001 | Banana | cytosol | 19.84 | 52.82 |
| AT5G16090.1 | Thale cress | cytosol | 23.28 | 51.46 |
| AT1G16190.1 | Thale cress | cytosol | 48.41 | 49.73 |
| AT1G79650.4 | Thale cress | cytosol | 51.06 | 48.86 |
| HORVU7Hr1G042100.8 | Barley | cytosol | 53.44 | 48.1 |
| Zm00001d005732_P001 | Maize | cytosol | 56.35 | 47.87 |
| Zm00001d020419_P003 | Maize | cytosol | 49.47 | 40.92 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | EntrezGene:833835 | EMBL:AB109198 |
| EMBL:AB109199 | ProteinID:AED94321.1 | ArrayExpress:AT5G38470 | EnsemblPlantsGene:AT5G38470 | RefSeq:AT5G38470 | TAIR:AT5G38470 |
| RefSeq:AT5G38470-TAIR-G | EnsemblPlants:AT5G38470.1 | TAIR:AT5G38470.1 | EMBL:AY037181 | EMBL:AY058196 | EMBL:AY081835 |
| EMBL:AY087564 | Unigene:At.25434 | ProteinID:BAB09359.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006289 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031593 | GO:GO:0043130 |
| GO:GO:0043161 | GO:GO:0070628 | InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 | RefSeq:NP_198663.1 |
| PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01839 | PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 |
| PANTHER:PTHR10621:SF7 | UniProt:Q84L30 | Symbol:RAD23D | InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 |
| SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 |
| InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI00000A89BD | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd |
| InterPro:XPC-bd_sf | SEG:seg | : | : | : | : |
Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
Coordinates
chr5:+:15404622..15407745
Molecular Weight (calculated)
40068.3 Da
IEP (calculated)
4.293
GRAVY (calculated)
-0.210
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.