Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15590_001 | Banana | cytosol | 22.81 | 27.46 |
| Bra008649.1-P | Field mustard | cytosol | 51.46 | 25.58 |
| CDY26493 | Canola | cytosol | 51.46 | 24.79 |
| CDX69474 | Canola | cytosol | 52.05 | 24.38 |
| CDY26494 | Canola | nucleus | 36.84 | 23.42 |
| AT5G38470.1 | Thale cress | cytosol | 51.46 | 23.28 |
| Bra008647.1-P | Field mustard | cytosol | 47.95 | 23.1 |
| CDX69472 | Canola | cytosol | 47.95 | 23.1 |
| AT3G02540.1 | Thale cress | cytosol | 55.56 | 22.67 |
| CDY26496 | Canola | cytosol | 47.37 | 22.56 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 50.29 | 21.94 |
| Os09t0407200-01 | Rice | cytosol | 49.12 | 21.43 |
| Zm00001d037326_P001 | Maize | cytosol | 50.29 | 21.39 |
| KXG35597 | Sorghum | cytosol | 49.71 | 21.36 |
| KXG19738 | Sorghum | cytosol | 50.88 | 21.32 |
| TraesCS5B01G204000.1 | Wheat | cytosol | 49.12 | 21.27 |
| TraesCS5A01G204200.1 | Wheat | cytosol | 49.12 | 21.27 |
| Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 50.88 | 21.07 |
| TraesCS5D01G211900.1 | Wheat | cytosol | 48.54 | 21.01 |
| Zm00001d045665_P003 | Maize | cytosol | 49.71 | 20.73 |
| GSMUA_Achr3P07380_001 | Banana | cytosol | 49.12 | 20.54 |
| GSMUA_Achr9P15580_001 | Banana | cytosol | 26.32 | 20.36 |
| Os08t0430200-01 | Rice | cytosol | 47.37 | 19.95 |
| TraesCS7B01G113500.1 | Wheat | cytosol | 47.37 | 19.9 |
| TraesCS7D01G209100.1 | Wheat | cytosol | 47.37 | 19.9 |
| TraesCS7A01G206300.1 | Wheat | cytosol | 46.78 | 19.61 |
| HORVU5Hr1G060920.1 | Barley | mitochondrion | 48.54 | 19.17 |
| Zm00001d005732_P001 | Maize | cytosol | 49.12 | 18.88 |
| AT1G16190.1 | Thale cress | cytosol | 39.77 | 18.48 |
| Zm00001d020419_P003 | Maize | cytosol | 47.95 | 17.94 |
| AT1G79650.4 | Thale cress | cytosol | 39.77 | 17.22 |
| HORVU7Hr1G042100.8 | Barley | cytosol | 35.09 | 14.29 |
| Bra008648.1-P | Field mustard | cytosol | 49.71 | 13.56 |
| CDX69473 | Canola | cytosol | 50.29 | 13.05 |
| CDY26495 | Canola | cytosol | 12.87 | 11.58 |
| Os02t0465000-00 | Rice | cytosol | 2.92 | 5.43 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:831466 | ProteinID:AED92245.1 | ArrayExpress:AT5G16090 |
| EnsemblPlantsGene:AT5G16090 | RefSeq:AT5G16090 | TAIR:AT5G16090 | RefSeq:AT5G16090-TAIR-G | EnsemblPlants:AT5G16090.1 | TAIR:AT5G16090.1 |
| UniProt:F4KCN6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 | InterPro:IPR000626 | InterPro:IPR015940 | RefSeq:NP_197113.4 |
| PFAM:PF00240 | PFAM:PF00627 | PRINTS:PR01839 | PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 |
| PANTHER:PTHR10621:SF8 | InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 | SUPFAM:SSF46934 | SUPFAM:SSF54236 |
| InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI0001A7B144 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | : |
Description
INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N /.../nal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.1); Has 1311 Blast hits to 954 proteins in 240 species: Archae - 0; Bacteria - 0; Metazoa - 634; Fungi - 179; Plants - 321; Viruses - 27; Other Eukaryotes - 150 (source: NCBI BLink). [Source:TAIR;Acc:AT5G16090]
Coordinates
chr5:-:5255797..5257351
Molecular Weight (calculated)
19545.7 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.268
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIIVKTLKG IRFEIEVKPN DSVAEVKKNI ETVMGASEYP AAQQILIHKR EKLRDETTME ANKVFDKSVI AIIITKGCLE EMEKQNPPLF QMIRHNSAGF
101: VPVLNKESFE RDNELAQPEE DLLQLQVTAV DDEAINRLEA MGFERRVVLE VFLACNKNEQ LAANFLLDHI H
101: VPVLNKESFE RDNELAQPEE DLLQLQVTAV DDEAINRLEA MGFERRVVLE VFLACNKNEQ LAANFLLDHI H
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.