Factsheet for TraesCS7B01G113500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G071300.2
TraesCS4B01G227200.2
TraesCS4D01G227900.2
TraesCS6A01G116500.1
TraesCS6B01G144500.1
TraesCS6D01G105500.1
TraesCS7A01G421600.1
TraesCS7A01G421700.1
TraesCS7B01G321900.1
TraesCS7B01G322000.1
TraesCS7D01G413800.1
TraesCS7D01G413900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	TraesCS6A01G116500.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS6B01G144500.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS6D01G105500.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7A01G421600.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7A01G421700.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7B01G321900.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7B01G322000.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7D01G413800.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7D01G413900.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS4A01G071300.2	AT4G38630.1	20059542
AT3G02540.1	TraesCS4B01G227200.2	AT4G38630.1	20059542
AT3G02540.1	TraesCS4D01G227900.2	AT4G38630.1	20059542
AT5G38470.1	TraesCS4A01G071300.2	AT4G38630.1	20059542
AT5G38470.1	TraesCS4B01G227200.2	AT4G38630.1	20059542
AT5G38470.1	TraesCS4D01G227900.2	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G209100.1	Wheat	cytosol	96.07	96.07
TraesCS7A01G206300.1	Wheat	cytosol	83.54	83.33
HORVU7Hr1G042100.8	Barley	cytosol	82.06	79.52
Os06t0264300-01	Rice	cytosol, nucleus, plastid	76.66	75.54
Zm00001d037326_P001	Maize	cytosol	72.24	73.13
KXG19738	Sorghum	cytosol	73.22	73.04
Zm00001d045665_P003	Maize	cytosol	72.73	72.2
GSMUA_Achr9P15580_001	Banana	cytosol	37.59	69.23
GSMUA_Achr5P05860_001	Banana	cytosol	61.43	63.78
Solyc02g085840.2.1	Tomato	cytosol	60.2	62.98
PGSC0003DMT400032941	Potato	cytosol	60.2	62.82
Solyc02g063130.2.1	Tomato	cytosol, extracellular	58.72	62.4
GSMUA_Achr3P07380_001	Banana	cytosol	62.65	62.35
VIT_14s0006g03040.t01	Wine grape	cytosol	58.23	62.2
PGSC0003DMT400062159	Potato	cytosol	58.97	62.18
KRH75377	Soybean	cytosol, nucleus	59.71	61.99
VIT_01s0011g03410.t01	Wine grape	cytosol	60.44	61.96
CDY01661	Canola	cytosol	57.0	61.38
Bra028184.1-P	Field mustard	cytosol	56.76	61.11
CDX74522	Canola	cytosol	57.0	61.05
AT5G38470.1	Thale cress	cytosol	55.77	60.05
CDX67404	Canola	cytosol	56.27	59.95
CDY58121	Canola	cytosol	56.51	59.9
Bra028408.1-P	Field mustard	cytosol	56.02	59.69
CDX74251	Canola	cytosol	57.74	58.6
KRG90804	Soybean	cytosol	57.74	58.46
KRH45279	Soybean	cytosol	57.49	58.35
Bra001050.1-P	Field mustard	cytosol	57.49	58.35
CDX91998	Canola	cytosol	57.49	58.06
KRH35965	Soybean	cytosol	57.74	57.6
Solyc04g007120.2.1	Tomato	cytosol, plastid	57.25	56.97
TraesCS5B01G204000.1	Wheat	cytosol	55.28	56.96
AT3G02540.1	Thale cress	cytosol	56.51	54.89
KRH01763	Soybean	cytosol	47.91	52.0
AT5G16090.1	Thale cress	cytosol	19.9	47.37
TraesCS6B01G177400.1	Wheat	cytosol	42.01	46.59
CDY26493	Canola	cytosol	32.43	37.18
CDX69474	Canola	cytosol	31.94	35.62
Bra008649.1-P	Field mustard	cytosol	29.98	35.47
CDY26494	Canola	nucleus	22.6	34.2
CDY26496	Canola	cytosol	28.5	32.31
Bra008647.1-P	Field mustard	cytosol	26.29	30.14
CDX69472	Canola	cytosol	26.29	30.14
CDY26495	Canola	cytosol	11.79	25.26
Bra008648.1-P	Field mustard	cytosol	28.99	18.82
CDX69473	Canola	cytosol	29.48	18.21

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	EnsemblPlantsGene:TraesCS7B01G113500	EnsemblPlants:TraesCS7B01G113500.1	InterPro:UBA	InterPro:UBA-like_sf
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr7B:+:131739246..131745419

Molecular Weight (calculated)

42567.3 Da

IEP (calculated)

4.337

GRAVY (calculated)

-0.226

Length

407 amino acids

Sequence
(BLAST)

001: MKLNVKTLKG TSFEIEATPE ASVGEVKRII ESAQGQNVYP ADQLMIIYQG KILKDDTTLE VNKVAENSFL VIMLSKPKAS SSGASTASKT PVSQSQPATP
101: PAPVTSAARS PPSQAPVAAS EPAPPSAQPS AVSDTPSPAV TASGDADVYS QAASNLVSGG SLEQTVQQIL DMGGGTWERD MVVRALRAAY NNPERAIDYL
201: YSGIPESVEA PPVARAPAPA QQAPNLQAPQ AQAAPLPPVQ PSGGVSAGPN ANPLNLFPQG IPSGGANAGA GVGAGAGALD ALRQLPQFQA LLALVQANPQ
301: ILQPMLQELG KQNPQILRLI QENQAEFLRL VNETPESGAG GNILGALAAQ MPQAVQVTPE EREAIQRLEA MGFNRELVLE VFFACNRDEE LAANYLLDHG
401: HEFEEQQ

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.