Factsheet for VIT_14s0006g03040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00060.t01
VIT_04s0023g03620.t01
VIT_12s0028g03130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	VIT_12s0028g03130.t01	AT2G20580.1	21798944
AT3G02540.1	VIT_04s0008g00060.t01	AT4G38630.1	20059542
AT3G02540.1	VIT_04s0023g03620.t01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P15580_001	Banana	cytosol	42.78	73.76
VIT_01s0011g03410.t01	Wine grape	cytosol	76.64	73.55
GSMUA_Achr5P05860_001	Banana	cytosol	71.92	69.9
CDX91998	Canola	cytosol	72.18	68.24
CDX74251	Canola	cytosol	70.6	67.08
GSMUA_Achr3P07380_001	Banana	cytosol	71.13	66.26
Bra001050.1-P	Field mustard	cytosol	68.77	65.34
AT3G02540.1	Thale cress	cytosol	71.65	65.16
Os02t0465000-00	Rice	cytosol	14.96	61.96
TraesCS7D01G209100.1	Wheat	cytosol	62.2	58.23
TraesCS7B01G113500.1	Wheat	cytosol	62.2	58.23
Os06t0264300-01	Rice	cytosol, nucleus, plastid	62.2	57.38
KXG35597	Sorghum	cytosol	59.84	57.29
KXG19738	Sorghum	cytosol	60.37	56.37
TraesCS5B01G204000.1	Wheat	cytosol	58.27	56.2
Zm00001d037326_P001	Maize	cytosol	59.06	55.97
TraesCS5D01G211900.1	Wheat	cytosol	58.01	55.95
TraesCS7A01G206300.1	Wheat	cytosol	59.84	55.88
Zm00001d045665_P003	Maize	cytosol	59.32	55.12
Os09t0407200-01	Rice	cytosol	56.69	55.1
Os08t0430200-01	Rice	cytosol	58.53	54.93
TraesCS5A01G204200.1	Wheat	cytosol	56.69	54.68
GSMUA_Achr9P15590_001	Banana	cytosol	19.95	53.52
HORVU5Hr1G060920.1	Barley	mitochondrion	57.22	50.35
Zm00001d005732_P001	Maize	cytosol	56.96	48.76
HORVU7Hr1G042100.8	Barley	cytosol	53.28	48.33
VIT_09s0018g01400.t01	Wine grape	cytosol	51.44	47.69
Zm00001d020419_P003	Maize	cytosol	50.13	41.79

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100244610	wikigene:100244610	MapMan:19.2.4.4.1	Gene3D:3.10.20.90
ProteinID:CBI33660	ProteinID:CBI33660.3	UniProt:D7TT38	EMBL:FN596245	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0031593	GO:GO:0043130	GO:GO:0043161	GO:GO:0070628	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	EntrezGene:LOC100244610	wikigene:LOC100244610	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	TIGR:TC62564	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00015C84D9
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	ArrayExpress:VIT_14s0006g03040	EnsemblPlantsGene:VIT_14s0006g03040	EnsemblPlants:VIT_14s0006g03040.t01	unigene:Vvi.9008
InterPro:XPC-bd	InterPro:XPC-bd_sf	RefSeq:XP_002283656	RefSeq:XP_002283656.1	RefSeq:XP_002283661	RefSeq:XP_002283661.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:21433411..21444393

Molecular Weight (calculated)

40764.2 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.244

Length

381 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DTVADVKKNI ELVHGTDVYP AAQQMLIHQG KVLKDATTLD ENQVAESSFV VIMLSKNKVS AGGASTTSAA PTSQAQPVSS
101: SPPTSNQPST APQAPVVALP EVIPEPAPAV APSISSDSDI YGQAASNLVA GNNLEVTIQQ ILDMGGGSWD RDTVVRALRA AYNNPERAVE YLYSGIPEQA
201: EGPPAARPPA SGLAVNLPTQ APQGPQTTVA SSGPNANPLD LFPQGLPSMG SNASAGTLDF LRNSPQFQAL RAMVQANPQI LQPMLQELGK QNPHLMRLIQ
301: EHQADFLRLI NEPVEGEGNV LGQLGTVPQA VTITPEERES IERLEAMGFD RALVLEVFFA CNKNEELAAN YLLDHMHEFE E

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.