Factsheet for GSMUA_Achr5P05860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P10580_001
GSMUA_Achr2P11290_001
GSMUA_Achr4P25580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	GSMUA_Achr11P...	AT2G20580.1	21798944
AT3G02540.1	GSMUA_Achr1P10580_001	AT2G20580.1	21798944
AT3G02540.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT3G02540.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT3G02540.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P15580_001	Banana	cytosol	49.74	88.24
GSMUA_Achr3P07380_001	Banana	cytosol	83.67	80.2
VIT_14s0006g03040.t01	Wine grape	cytosol	69.9	71.92
Solyc02g063130.2.1	Tomato	cytosol, extracellular	67.6	69.19
PGSC0003DMT400062159	Potato	cytosol	67.86	68.91
Bra028184.1-P	Field mustard	cytosol	65.56	67.99
KRH75377	Soybean	cytosol, nucleus	67.86	67.86
CDY01661	Canola	cytosol	65.05	67.46
PGSC0003DMT400032941	Potato	cytosol	67.09	67.44
Solyc02g085840.2.1	Tomato	cytosol	66.58	67.1
VIT_01s0011g03410.t01	Wine grape	cytosol	67.86	67.0
KRH45279	Soybean	cytosol	68.11	66.58
AT5G38470.1	Thale cress	cytosol	64.03	66.4
CDY58121	Canola	cytosol	64.8	66.15
CDX74522	Canola	cytosol	64.03	66.05
Bra028408.1-P	Field mustard	cytosol	64.29	65.97
KRG90804	Soybean	cytosol	67.6	65.92
CDX67404	Canola	cytosol	63.52	65.18
CDX91998	Canola	cytosol	66.33	64.52
KRH35965	Soybean	cytosol	67.09	64.46
CDX74251	Canola	cytosol	65.82	64.34
Os02t0465000-00	Rice	cytosol	15.05	64.13
Bra001050.1-P	Field mustard	cytosol	64.29	62.84
GSMUA_Achr9P15590_001	Banana	cytosol	22.7	62.68
TraesCS5B01G204000.1	Wheat	cytosol	62.5	62.03
AT3G02540.1	Thale cress	cytosol	66.07	61.81
TraesCS5D01G211900.1	Wheat	cytosol	62.24	61.77
Os06t0264300-01	Rice	cytosol, nucleus, plastid	65.05	61.74
TraesCS7B01G113500.1	Wheat	cytosol	63.78	61.43
TraesCS7D01G209100.1	Wheat	cytosol	63.78	61.43
Solyc04g007120.2.1	Tomato	cytosol, plastid	64.03	61.37
TraesCS5A01G204200.1	Wheat	cytosol	61.48	61.01
Os09t0407200-01	Rice	cytosol	60.46	60.46
Os08t0430200-01	Rice	cytosol	61.99	59.85
KXG35597	Sorghum	cytosol	60.2	59.3
Zm00001d045665_P003	Maize	cytosol	61.99	59.27
TraesCS7A01G206300.1	Wheat	cytosol	61.48	59.07
KXG19738	Sorghum	cytosol	61.22	58.82
Zm00001d037326_P001	Maize	cytosol	59.69	58.21
KRH01763	Soybean	cytosol	54.59	57.07
HORVU5Hr1G060920.1	Barley	mitochondrion	63.01	57.04
HORVU7Hr1G042100.8	Barley	cytosol	56.63	52.86
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	22.7	51.15
Zm00001d005732_P001	Maize	cytosol	57.91	51.01
AT5G16090.1	Thale cress	cytosol	21.94	50.29
GSMUA_Achr4P20500_001	Banana	cytosol	48.72	49.1
GSMUA_Achr1P25580_001	Banana	cytosol	45.92	46.88
GSMUA_Achr7P05120_001	Banana	cytosol	30.36	43.59
Zm00001d020419_P003	Maize	cytosol	50.77	43.54
Bra008649.1-P	Field mustard	cytosol	34.69	39.53
CDY26493	Canola	cytosol	35.71	39.44
CDX69474	Canola	cytosol	35.71	38.36
CDY26496	Canola	cytosol	32.91	35.93
CDY26494	Canola	nucleus	24.23	35.32
CDX69472	Canola	cytosol	31.63	34.93
Bra008647.1-P	Field mustard	cytosol	31.63	34.93
CDY26495	Canola	cytosol	11.99	24.74
Bra008648.1-P	Field mustard	cytosol	33.42	20.89
CDX69473	Canola	cytosol	33.42	19.88

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
EnsemblPlantsGene:GSMUA_Achr5G05860_001	EnsemblPlants:GSMUA_Achr5P05860_001	EnsemblPlants:GSMUA_Achr5T05860_001	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
UniProt:M0SW15	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000296BC13	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

Probable DNA repair protein RAD23 [Source:GMGC_GENE;Acc:GSMUA_Achr5G05860_001]

Coordinates

chr5:-:4351495..4363972

Molecular Weight (calculated)

41802.4 Da

IEP (calculated)

4.466

GRAVY (calculated)

-0.271

Length

392 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG SNFEIDVNPE DTVADVKKNI ETSQGKTVYP AEQQMLIHQG KILKDDTTLD ENKVFENSFL VIMLSKTKGS SSGASTTEKV PVSQAPPTIT
101: APPVSSVPVS APSQVPAPTL SSVPTNAPTP TATAAPAPAA TISTEVDSYG QAASNLVAGS TLEQTIQQIL DMGGGTWERD TVVRALRAAY NNPERAVEYL
201: YSGIPDHAEA APVARAPASG QTVNSPVEAP QPVQPAVPSS GPNANPLDIF PQGLPNVGSH AGGGSLDFLR NSPQFRALQA LVQANPQILQ PMLQELGKQN
301: PQIMRLIQEH QGEFLRLINE PAEGTEGSNV LGQLAAGMPQ ALTVTPEERE AIERLEAMGF DRALVLQVFF ACNKNEELAA NYLLDHMHEF ED

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.