Factsheet for Bra008649.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69474	Canola	cytosol	93.02	87.67
Bra008647.1-P	Field mustard	cytosol	56.69	54.93
AT5G16090.1	Thale cress	cytosol	25.58	51.46
GSMUA_Achr9P15590_001	Banana	cytosol	15.12	36.62
Bra028184.1-P	Field mustard	cytosol	38.95	35.45
Bra028408.1-P	Field mustard	cytosol	38.95	35.08
Os02t0465000-00	Rice	cytosol	9.3	34.78
GSMUA_Achr5P05860_001	Banana	cytosol	39.53	34.69
Bra001050.1-P	Field mustard	cytosol	38.08	32.67
GSMUA_Achr3P07380_001	Banana	cytosol	38.37	32.27
GSMUA_Achr9P15580_001	Banana	cytosol	20.06	31.22
TraesCS5A01G204200.1	Wheat	cytosol	35.76	31.14
TraesCS5D01G211900.1	Wheat	cytosol	35.17	30.63
TraesCS5B01G204000.1	Wheat	cytosol	35.17	30.63
Os06t0264300-01	Rice	cytosol, nucleus, plastid	36.63	30.51
KXG19738	Sorghum	cytosol	36.05	30.39
Bra026728.1-P	Field mustard	cytosol	31.69	30.36
Zm00001d037326_P001	Maize	cytosol	35.47	30.35
TraesCS7D01G209100.1	Wheat	cytosol	35.76	30.22
TraesCS7A01G206300.1	Wheat	cytosol	35.76	30.15
Os09t0407200-01	Rice	cytosol	34.3	30.1
TraesCS7B01G113500.1	Wheat	cytosol	35.47	29.98
KXG35597	Sorghum	cytosol	34.59	29.9
Zm00001d045665_P003	Maize	cytosol	35.47	29.76
Os08t0430200-01	Rice	cytosol	34.88	29.56
Bra008648.1-P	Field mustard	cytosol	53.78	29.51
Bra026076.1-P	Field mustard	cytosol	31.4	29.27
HORVU5Hr1G060920.1	Barley	mitochondrion	35.47	28.18
HORVU7Hr1G042100.8	Barley	cytosol	31.98	26.19
Zm00001d005732_P001	Maize	cytosol	33.14	25.62
Zm00001d020419_P003	Maize	cytosol	32.85	24.73
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	28.78	23.02

Protein Annotations

Gene3D:1.10.8.10	Gene3D:3.10.20.90	MapMan:35.1	EnsemblPlantsGene:Bra008649	EnsemblPlants:Bra008649.1	EnsemblPlants:Bra008649.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	UniProt:M4CWQ2
PFAM:PF00240	PFAM:PF00627	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621
PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002544C28	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

AT3G02540 (E=2e-024) RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3); damaged DNA binding

Coordinates

chrA10:+:13233140..13235352

Molecular Weight (calculated)

37661.7 Da

IEP (calculated)

4.332

GRAVY (calculated)

-0.574

Length

344 amino acids

Sequence
(BLAST)

001: MKIFVKNLKG ARFEIQVSPE DSVGDVKKNI ETVMGVTAYP AAEQVLIHKG KVLKDETTLA ANNVSEKSVI GVIKKKPAST GTSTAPASLT ALVHAAHPSS
101: TETETPVTPT EPAWDAASNG NYESISESNI QQILEMVRGA WSREAVAYAL CLAYDDLNKA LEYIYFGIPV KSEDHYTTEG TQEQTQEPAE ADLEWSLDSL
201: RHTPEDFLLM LKEQNPPFFQ LIQDNKADFL RLLLEQPQEP NNGGDGGNQV GDSEETQVVQ PPKELQADQT NEPNNGGGDG GNQVGESKET KVEVATPEDY
301: ELIERLEALG FERGDAAVAY FACNKNVQVA ANHLLGYKHE SRRE

Best Arabidopsis Sequence Match ( AT1G79650.2 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQP VSATTSSTKP
101: AAPSTTQSSP VPASPIPAQE QPAAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPQTAEV AVPVPEAQIA
201: GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE
301: GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.