Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0146700-02 | |
| Os03t0243300-01 | |
| Os06t0699900-01 | |
| Os09t0326800-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15580_001 | Banana | cytosol | 40.22 | 16.74 |
| Os08t0430200-01 | Rice | cytosol | 72.83 | 16.5 |
| KRH75377 | Soybean | cytosol, nucleus | 66.3 | 15.56 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 64.13 | 15.05 |
| KRH45279 | Soybean | cytosol | 65.22 | 14.96 |
| VIT_14s0006g03040.t01 | Wine grape | cytosol | 61.96 | 14.96 |
| KRG90804 | Soybean | cytosol | 65.22 | 14.93 |
| Bra028408.1-P | Field mustard | cytosol | 61.96 | 14.92 |
| CDX67404 | Canola | cytosol | 61.96 | 14.92 |
| CDY58121 | Canola | cytosol | 61.96 | 14.84 |
| Bra028184.1-P | Field mustard | cytosol | 60.87 | 14.81 |
| CDY01661 | Canola | cytosol | 60.87 | 14.81 |
| AT5G38470.1 | Thale cress | cytosol | 60.87 | 14.81 |
| PGSC0003DMT400062159 | Potato | cytosol | 61.96 | 14.77 |
| CDX74522 | Canola | cytosol | 60.87 | 14.74 |
| Solyc02g063130.2.1 | Tomato | cytosol, extracellular | 60.87 | 14.62 |
| KRH35965 | Soybean | cytosol | 64.13 | 14.46 |
| CDX74251 | Canola | cytosol | 61.96 | 14.21 |
| Bra001050.1-P | Field mustard | cytosol | 61.96 | 14.21 |
| CDX91998 | Canola | cytosol | 61.96 | 14.14 |
| Solyc02g085840.2.1 | Tomato | cytosol | 59.78 | 14.14 |
| VIT_01s0011g03410.t01 | Wine grape | cytosol | 60.87 | 14.11 |
| PGSC0003DMT400032941 | Potato | cytosol | 59.78 | 14.1 |
| Os09t0407200-01 | Rice | cytosol | 59.78 | 14.03 |
| GSMUA_Achr3P07380_001 | Banana | cytosol | 61.96 | 13.94 |
| KRH01763 | Soybean | cytosol | 55.43 | 13.6 |
| AT3G02540.1 | Thale cress | cytosol | 60.87 | 13.37 |
| Os02t0179300-01 | Rice | plasma membrane | 53.26 | 13.28 |
| Solyc04g007120.2.1 | Tomato | cytosol, plastid | 57.61 | 12.96 |
| Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 57.61 | 12.83 |
| CDY26493 | Canola | cytosol | 36.96 | 9.58 |
| Bra008649.1-P | Field mustard | cytosol | 34.78 | 9.3 |
| CDY26496 | Canola | cytosol | 34.78 | 8.91 |
| CDX69474 | Canola | cytosol | 34.78 | 8.77 |
| CDX69472 | Canola | cytosol | 33.7 | 8.73 |
| Bra008647.1-P | Field mustard | cytosol | 33.7 | 8.73 |
| CDY26494 | Canola | nucleus | 18.48 | 6.32 |
| Bra008648.1-P | Field mustard | cytosol | 38.04 | 5.58 |
| CDX69473 | Canola | cytosol | 38.04 | 5.31 |
| CDY26495 | Canola | cytosol | 10.87 | 5.26 |
| AT5G16090.1 | Thale cress | cytosol | 5.43 | 2.92 |
Protein Annotations
| EnsemblPlants:Os02t0465000-00 | EnsemblPlantsGene:Os02g0465000 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR015940 | InterPro:UBA | InterPro:UBA-like_sf |
| PANTHER:PTHR10621 | PANTHER:PTHR10621:SF7 | PFAM:PF00627 | PFscan:PS50030 | ProteinID:BAS78581.1 | SUPFAM:SSF46934 |
| UniParc:UPI000393AD93 | UniProt:A0A0P0VIT9 | MapMan:19.2.4.4.1 | : | : | : |
Description
Similar to DNA repair protein RAD23. (Os02t0465000-00)
Coordinates
chr2:+:15626805..15628300
Molecular Weight (calculated)
9362.0 Da
IEP (calculated)
3.992
GRAVY (calculated)
0.124
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKASTEADI YGLAASNLVA GSNLEGTVQS ILEMGGGAWD RDTVMRALGA AYNNPERAVE YLYTGLPGQA EASAVVQALS VPAAVQAFPT SG
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
Arabidopsis Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.