Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15580_001 | Banana | cytosol | 46.21 | 85.52 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 80.2 | 83.67 |
| VIT_14s0006g03040.t01 | Wine grape | cytosol | 66.26 | 71.13 |
| VIT_01s0011g03410.t01 | Wine grape | cytosol | 65.77 | 67.76 |
| PGSC0003DMT400062159 | Potato | cytosol | 63.81 | 67.62 |
| Solyc02g063130.2.1 | Tomato | cytosol, extracellular | 63.08 | 67.36 |
| KRH75377 | Soybean | cytosol, nucleus | 64.55 | 67.35 |
| CDY01661 | Canola | cytosol | 61.86 | 66.93 |
| Bra028184.1-P | Field mustard | cytosol | 61.61 | 66.67 |
| PGSC0003DMT400032941 | Potato | cytosol | 63.33 | 66.41 |
| Solyc02g085840.2.1 | Tomato | cytosol | 63.08 | 66.32 |
| AT5G38470.1 | Thale cress | cytosol | 60.88 | 65.87 |
| KRH45279 | Soybean | cytosol | 64.3 | 65.59 |
| CDX74522 | Canola | cytosol | 60.88 | 65.53 |
| KRG90804 | Soybean | cytosol | 63.81 | 64.93 |
| CDX74251 | Canola | cytosol | 63.57 | 64.84 |
| GSMUA_Achr9P15590_001 | Banana | cytosol | 22.49 | 64.79 |
| CDY58121 | Canola | cytosol | 60.64 | 64.58 |
| Bra028408.1-P | Field mustard | cytosol | 60.15 | 64.4 |
| CDX91998 | Canola | cytosol | 63.33 | 64.27 |
| KRH35965 | Soybean | cytosol | 63.33 | 63.48 |
| CDX67404 | Canola | cytosol | 59.17 | 63.35 |
| Bra001050.1-P | Field mustard | cytosol | 61.86 | 63.09 |
| TraesCS7B01G113500.1 | Wheat | cytosol | 62.35 | 62.65 |
| TraesCS7D01G209100.1 | Wheat | cytosol | 62.1 | 62.41 |
| Solyc04g007120.2.1 | Tomato | cytosol, plastid | 62.35 | 62.35 |
| Os02t0465000-00 | Rice | cytosol | 13.94 | 61.96 |
| TraesCS5B01G204000.1 | Wheat | cytosol | 59.17 | 61.27 |
| TraesCS5D01G211900.1 | Wheat | cytosol | 58.92 | 61.01 |
| AT3G02540.1 | Thale cress | cytosol | 62.1 | 60.62 |
| Os06t0264300-01 | Rice | cytosol, nucleus, plastid | 61.12 | 60.53 |
| Os09t0407200-01 | Rice | cytosol | 57.7 | 60.2 |
| KXG19738 | Sorghum | cytosol | 59.9 | 60.05 |
| Zm00001d045665_P003 | Maize | cytosol | 60.15 | 60.0 |
| KXG35597 | Sorghum | cytosol | 58.19 | 59.8 |
| TraesCS7A01G206300.1 | Wheat | cytosol | 59.41 | 59.56 |
| Zm00001d037326_P001 | Maize | cytosol | 58.19 | 59.2 |
| TraesCS5A01G204200.1 | Wheat | cytosol | 56.48 | 58.48 |
| Os08t0430200-01 | Rice | cytosol | 57.7 | 58.13 |
| KRH01763 | Soybean | cytosol | 50.86 | 55.47 |
| HORVU5Hr1G060920.1 | Barley | mitochondrion | 58.68 | 55.43 |
| GSMUA_Achr7P05130_001 | Banana | endoplasmic reticulum | 22.25 | 52.3 |
| HORVU7Hr1G042100.8 | Barley | cytosol | 53.55 | 52.14 |
| Zm00001d005732_P001 | Maize | cytosol | 54.28 | 49.89 |
| GSMUA_Achr4P20500_001 | Banana | cytosol | 47.19 | 49.61 |
| AT5G16090.1 | Thale cress | cytosol | 20.54 | 49.12 |
| GSMUA_Achr1P25580_001 | Banana | cytosol | 45.97 | 48.96 |
| GSMUA_Achr7P05120_001 | Banana | cytosol | 30.32 | 45.42 |
| Zm00001d020419_P003 | Maize | cytosol | 46.94 | 42.01 |
| Bra008649.1-P | Field mustard | cytosol | 32.27 | 38.37 |
| CDX69474 | Canola | cytosol | 33.74 | 37.81 |
| CDY26493 | Canola | cytosol | 32.52 | 37.46 |
| CDY26494 | Canola | nucleus | 22.74 | 34.57 |
| CDY26496 | Canola | cytosol | 30.32 | 34.54 |
| CDX69472 | Canola | cytosol | 28.12 | 32.39 |
| Bra008647.1-P | Field mustard | cytosol | 28.12 | 32.39 |
| CDY26495 | Canola | cytosol | 11.74 | 25.26 |
| Bra008648.1-P | Field mustard | cytosol | 30.32 | 19.78 |
| CDX69473 | Canola | cytosol | 30.07 | 18.66 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 |
| EnsemblPlantsGene:GSMUA_Achr3G07380_001 | EnsemblPlants:GSMUA_Achr3P07380_001 | EnsemblPlants:GSMUA_Achr3T07380_001 | InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 |
| UniProt:M0SCK5 | PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 | PRINTS:PR01839 | PFscan:PS50030 |
| PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF8 | InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 |
| SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 |
| InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI0002968D15 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd |
| InterPro:XPC-bd_sf | SEG:seg | : | : | : | : |
Description
Putative DNA repair protein RAD23-3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G07380_001]
Coordinates
chr3:-:5074611..5086290
Molecular Weight (calculated)
43189.9 Da
IEP (calculated)
4.537
GRAVY (calculated)
-0.301
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIFVKTLKG TNFEIDVKPE DTVAAVKRYI ETSQGKTVYP AEQQMLIHQG KILKDDTTLD ENKVCESTFL VIMLSKTKGS SSGASTTVQA PATQTKGSSS
101: GASTTVQAPA SQAPPTNTAP PVPSAQASAP SQAPSATLPF VPASTPAPTA AAAATPVATI SSEVDAYGQA ASNLVAGNTL EQTIQQILDM GGGTWARDTV
201: VRALRAAYNN PERAVEYLYS GIPENAEAPP VARAPASEQT TNAPAQAPQP VQAAVPSGGP NANPLDLFPQ GLPNVGSNAG GGSLDFLRNS PQFRALQALV
301: QANPQILQPM LQELGKQNPQ IMRLIQEHQG EFLRLINEPA EGTEGNPLGQ LAGGMPQTLN VTPEEREAIE RLEAMGFDRA LVLQVFFACN KNEELAANYL
401: LDHMHEFED
101: GASTTVQAPA SQAPPTNTAP PVPSAQASAP SQAPSATLPF VPASTPAPTA AAAATPVATI SSEVDAYGQA ASNLVAGNTL EQTIQQILDM GGGTWARDTV
201: VRALRAAYNN PERAVEYLYS GIPENAEAPP VARAPASEQT TNAPAQAPQP VQAAVPSGGP NANPLDLFPQ GLPNVGSNAG GGSLDFLRNS PQFRALQALV
301: QANPQILQPM LQELGKQNPQ IMRLIQEHQG EFLRLINEPA EGTEGNPLGQ LAGGMPQTLN VTPEEREAIE RLEAMGFDRA LVLQVFFACN KNEELAANYL
401: LDHMHEFED
001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE
Arabidopsis Description
RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.