Factsheet for GSMUA_Achr9P15590_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P10580_001
GSMUA_Achr2P11290_001
GSMUA_Achr4P25580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	GSMUA_Achr11P...	AT2G20580.1	21798944
AT3G02540.1	GSMUA_Achr1P10580_001	AT2G20580.1	21798944
AT3G02540.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT3G02540.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT3G02540.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT5G38470.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G16090.1	Thale cress	cytosol	27.46	22.81
GSMUA_Achr5P05860_001	Banana	cytosol	62.68	22.7
PGSC0003DMT400062159	Potato	cytosol	61.27	22.54
GSMUA_Achr3P07380_001	Banana	cytosol	64.79	22.49
Solyc02g063130.2.1	Tomato	cytosol, extracellular	59.86	22.19
VIT_01s0011g03410.t01	Wine grape	cytosol	59.86	21.41
CDX74522	Canola	cytosol	55.63	20.79
PGSC0003DMT400032941	Potato	cytosol	57.04	20.77
Bra028184.1-P	Field mustard	cytosol	54.93	20.63
CDY01661	Canola	cytosol	54.93	20.63
Solyc02g085840.2.1	Tomato	cytosol	55.63	20.31
KRH45279	Soybean	cytosol	57.04	20.2
KRH75377	Soybean	cytosol, nucleus	55.63	20.15
GSMUA_Achr7P05120_001	Banana	cytosol	38.73	20.15
Solyc04g007120.2.1	Tomato	cytosol, plastid	57.75	20.05
Bra001050.1-P	Field mustard	cytosol	56.34	19.95
VIT_14s0006g03040.t01	Wine grape	cytosol	53.52	19.95
AT5G38470.1	Thale cress	cytosol	52.82	19.84
KRH01763	Soybean	cytosol	52.11	19.73
CDX74251	Canola	cytosol	55.63	19.7
KRG90804	Soybean	cytosol	54.93	19.4
CDY26494	Canola	nucleus	36.62	19.33
CDX91998	Canola	cytosol	54.23	19.11
KRH35965	Soybean	cytosol	54.23	18.87
CDX67404	Canola	cytosol	50.0	18.59
AT3G02540.1	Thale cress	cytosol	54.23	18.38
Bra028408.1-P	Field mustard	cytosol	49.3	18.32
CDY58121	Canola	cytosol	49.3	18.23
CDX69474	Canola	cytosol	40.14	15.62
GSMUA_Achr4P20500_001	Banana	cytosol	41.55	15.17
Bra008649.1-P	Field mustard	cytosol	36.62	15.12
GSMUA_Achr1P25580_001	Banana	cytosol	40.85	15.1
CDY26496	Canola	cytosol	36.62	14.48
CDY26493	Canola	cytosol	34.51	13.8
CDX69472	Canola	cytosol	33.1	13.24
Bra008647.1-P	Field mustard	cytosol	33.1	13.24
CDY26495	Canola	cytosol	14.79	11.05
Bra008648.1-P	Field mustard	cytosol	36.62	8.29
CDX69473	Canola	cytosol	35.92	7.74
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	8.45	6.9
GSMUA_Achr9P15580_001	Banana	cytosol	4.93	3.17

Protein Annotations

EnsemblPlants:GSMUA_Achr9P15590_001	EnsemblPlants:GSMUA_Achr9T15590_001	EnsemblPlantsGene:GSMUA_Achr9G15590_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8
PFAM:PF00240	PFscan:PS50053	SEG:seg	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0002955950
UniProt:M0U0L7	MapMan:35.1	:	:	:	:

Description

Probable DNA repair protein RAD23 [Source:GMGC_GENE;Acc:GSMUA_Achr9G15590_001]

Coordinates

chr9:-:10301863..10311034

Molecular Weight (calculated)

14753.5 Da

IEP (calculated)

5.854

GRAVY (calculated)

-0.219

Length

142 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG TNFEIDVKPE DTVADVKRYI ETSQGKTVYP ADQQMLIHQG KVLKDDTTLD ENKVSENSFL VIMLSKSKGS SSGASTTSEA PPSQAPPTNT
101: ATLVPLAPAS APQASAATLP LIPTSAPVPT TTAAPAPGST IS

Best Arabidopsis Sequence Match ( AT5G38470.2 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEEWECYGTV GSSNATSCYR YT

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.