Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 19.31 | 4.78 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 19.31 | 4.52 |
| Solyc10g008180.1.1 | Tomato | plastid | 19.31 | 3.83 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 22.07 | 3.69 |
| Os09t0326800-01 | Rice | plasma membrane | 22.07 | 3.59 |
| Os06t0699900-01 | Rice | plasma membrane | 21.38 | 3.44 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 19.31 | 3.43 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 19.31 | 3.37 |
| EES04513 | Sorghum | cytosol | 20.69 | 3.36 |
| TraesCS6D01G105500.1 | Wheat | golgi | 20.69 | 3.35 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 20.69 | 3.35 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 20.69 | 3.34 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 20.69 | 3.32 |
| GSMUA_Achr11P... | Banana | cytosol | 20.0 | 3.27 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 20.0 | 3.25 |
| Os02t0146700-02 | Rice | plasma membrane | 20.0 | 3.23 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 19.31 | 3.18 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 19.31 | 3.18 |
| Zm00001d015259_P001 | Maize | cytosol | 19.31 | 3.15 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 17.93 | 3.12 |
| Solyc07g053650.2.1 | Tomato | nucleus | 17.24 | 3.04 |
| CDY31952 | Canola | plasma membrane | 17.93 | 3.04 |
| CDY05774 | Canola | cytosol | 18.62 | 3.01 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 17.93 | 2.94 |
| AT2G20580.1 | Thale cress | cytosol | 17.93 | 2.92 |
| CDX97442 | Canola | cytosol | 17.24 | 2.83 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 17.24 | 2.82 |
| AT4G28470.1 | Thale cress | cytosol | 17.24 | 2.81 |
| Bra011030.1-P | Field mustard | cytosol | 17.24 | 2.81 |
| Bra024200.1-P | Field mustard | cytosol | 17.24 | 2.81 |
| CDY29907 | Canola | extracellular | 17.24 | 2.81 |
| CDX92875 | Canola | extracellular | 17.24 | 2.81 |
| CDY35187 | Canola | cytosol, extracellular | 17.24 | 2.8 |
| CDY38389 | Canola | cytosol, extracellular | 17.24 | 2.8 |
| PGSC0003DMT400024306 | Potato | cytosol | 17.24 | 2.79 |
| Bra010366.1-P | Field mustard | cytosol | 16.55 | 2.71 |
| CDY14239 | Canola | cytosol, extracellular | 16.55 | 2.7 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 16.55 | 2.7 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 4.83 | 2.4 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 3.45 | 2.03 |
| GSMUA_Achr1P10570_001 | Banana | extracellular | 2.07 | 2.01 |
| GSMUA_Achr1P10550_001 | Banana | cytosol | 12.41 | 1.78 |
| KRH30269 | Soybean | cytosol | 2.07 | 1.46 |
| CDY65736 | Canola | extracellular | 3.45 | 1.23 |
| CDY33144 | Canola | extracellular | 2.07 | 0.96 |
| KRH57675 | Soybean | cytosol | 1.38 | 0.66 |
| Solyc10g008170.2.1 | Tomato | cytosol | 0.69 | 0.5 |
| CDY72396 | Canola | cytosol | 0.0 | 0.0 |
| CDX99107 | Canola | cytosol | 0.0 | 0.0 |
| AT4G08140.1 | Thale cress | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400056260 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P10580_001 | EnsemblPlants:GSMUA_Achr1T10580_001 | EnsemblPlantsGene:GSMUA_Achr1G10580_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR10943 | PANTHER:PTHR10943:SF10 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002965DC3 | UniProt:M0RYR7 |
| MapMan:35.2 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G10580_001]
Coordinates
chr1:-:7984791..7987456
Molecular Weight (calculated)
16869.3 Da
IEP (calculated)
4.919
GRAVY (calculated)
0.063
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MSESQDSISD KKDEDEDLLL DRCITCCWQD VTMVLLEQLC SVARRRRTAM VHEPRQALRL HGPDEVNFLV HLFWPELHQR VSARISALYA EFCFWDIMVL
101: LVFSGQMFYY LGELNDSLSY ALRAGPLSFI SSNVYICICF SQCTR
101: LVFSGQMFYY LGELNDSLSY ALRAGPLSFI SSNVYICICF SQCTR
0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS
Arabidopsis Description
RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.