Factsheet for GSMUA_Achr11P15050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96935	Soybean	cytosol, nucleus	76.19	82.76
VIT_06s0004g03190.t01	Wine grape	nucleus	79.76	82.04
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	75.4	81.9
PGSC0003DMT400020843	Potato	cytosol	77.38	79.59
TraesCS4A01G220400.2	Wheat	cytosol, plastid	73.02	79.31
Bra038919.1-P	Field mustard	cytosol	46.43	79.05
Bra038162.1-P	Field mustard	cytosol	76.59	78.78
Solyc11g069150.1.1	Tomato	extracellular	76.59	78.78
CDY41710	Canola	cytosol	76.19	78.37
CDY42368	Canola	cytosol	76.19	78.37
CDY04377	Canola	cytosol, extracellular	75.79	77.96
TraesCS5B01G299900.1	Wheat	cytosol	75.4	77.87
TraesCS5A01G301400.1	Wheat	unclear	75.4	77.87
TraesCS4D01G095100.1	Wheat	cytosol	75.0	77.78
AT1G56450.1	Thale cress	cytosol	75.79	77.64
CDY68783	Canola	cytosol	75.4	77.55
TraesCS5D01G307400.1	Wheat	cytosol	74.6	75.81
Os09t0515200-01	Rice	cytosol	75.0	73.83
CDY39004	Canola	extracellular	76.19	73.56
EER99181	Sorghum	plastid	75.79	72.62
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	75.79	72.62
Bra027934.1-P	Field mustard	cytosol	76.19	72.45
CDY54948	Canola	cytosol	64.68	69.96
HORVU5Hr1G078810.1	Barley	plastid	75.4	63.33
TraesCS4B01G099100.1	Wheat	golgi	74.6	59.49
Zm00001d021147_P002	Maize	cytosol, plastid	73.81	42.96

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005839	GO:GO:0005840	GO:GO:0006508	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0022626	GO:GO:0046686	GO:GO:0051603	EnsemblPlantsGene:GSMUA_Achr11G15050_001
EnsemblPlants:GSMUA_Achr11P15050_001	EnsemblPlants:GSMUA_Achr11T15050_001	InterPro:IPR023333	InterPro:IPR029055	UniProt:M0RSD5	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF5
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000295C26A
SEG:seg	:	:	:	:	:

Description

Proteasome subunit beta type-4 [Source:GMGC_GENE;Acc:GSMUA_Achr11G15050_001]

Coordinates

chr11:-:16635026..16641100

Molecular Weight (calculated)

28391.1 Da

IEP (calculated)

7.802

GRAVY (calculated)

-0.304

Length

252 amino acids

Sequence
(BLAST)

001: MERLAIHHAN GMEMVAVKDS AISENGTERT LYPYVTGTSV IGMKYKDGVI LAADMGGSYG STLRYKSVER IKHIGKHSLL GASGEISDFQ EILRYLDELI
101: LYDNMWDDGN SLGPKEVHNY LTRVMYNRRN KFNPLWNSLV LGGVKNGQKY LGMVGMIGTH FEDNHVATGF GNHLARPILR AEWREDLSFE EAVKLLEKCL
201: LVLLYRDRSA INKFQIAKIT DEGVTISQPY ALKTYWGFSA FQNPSKGAEG SW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.