Factsheet for TraesCS5A01G301400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 1
nucleus 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G299900.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G220400.2	Wheat	cytosol, plastid	92.62	97.41
TraesCS5D01G307400.1	Wheat	cytosol	98.77	97.18
Os09t0515200-01	Rice	cytosol	88.11	83.98
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	88.11	81.75
EER99181	Sorghum	plastid	88.11	81.75
HORVU5Hr1G078810.1	Barley	plastid	95.9	78.0
GSMUA_Achr11P...	Banana	cytosol	77.87	75.4
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	68.85	72.41
KRG96935	Soybean	cytosol, nucleus	68.85	72.41
Bra038919.1-P	Field mustard	cytosol	42.62	70.27
VIT_06s0004g03190.t01	Wine grape	nucleus	70.49	70.2
CDY41710	Canola	cytosol	69.67	69.39
Bra038162.1-P	Field mustard	cytosol	69.67	69.39
CDY42368	Canola	cytosol	69.26	68.98
AT1G56450.1	Thale cress	cytosol	69.26	68.7
CDY04377	Canola	cytosol, extracellular	68.85	68.57
CDY68783	Canola	cytosol	68.03	67.76
PGSC0003DMT400020843	Potato	cytosol	68.03	67.76
Solyc11g069150.1.1	Tomato	extracellular	67.62	67.35
CDY39004	Canola	extracellular	68.85	64.37
Bra027934.1-P	Field mustard	cytosol	69.67	64.15
CDY54948	Canola	cytosol	59.43	62.23
Zm00001d021147_P002	Maize	cytosol, plastid	85.25	48.04

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS5A01G301400	EnsemblPlants:TraesCS5A01G301400.1	TIGR:cd03760	SEG:seg	:

Description

No Description!

Coordinates

chr5A:+:510288589..510290370

Molecular Weight (calculated)

27237.5 Da

IEP (calculated)

7.270

GRAVY (calculated)

-0.401

Length

244 amino acids

Sequence
(BLAST)

001: MDGSHSHAAG GGEGTQRTLN PYVTGNSVIA MKYKDGVIMA CDTGASYGST LRYKSVERIK EVGKHSLIGG SGEFSDFQEI LRYLDELTLN DHMWDDGNSL
101: GPKEIHAYLT RVMYNRRNKF DPLWNSLVLG GVKKGPKGDE KYLGMVNMIG THFEENHIAT GFGNHMAIPI LRGEWREDMT FEEAVKLIEK CLLVLLYRDR
201: SSINKFQIAK ITTEGSTIYP PYALKTNWGF AAFENPSKGA VGTW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.