Factsheet for Bra027934.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41710	Canola	cytosol	92.45	100.0
Bra038162.1-P	Field mustard	cytosol	89.81	97.14
AT1G56450.1	Thale cress	cytosol	86.04	92.68
Bra038919.1-P	Field mustard	cytosol	51.32	91.89
KRG96935	Soybean	cytosol, nucleus	72.08	82.33
VIT_06s0004g03190.t01	Wine grape	nucleus	75.85	82.04
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	71.7	81.9
PGSC0003DMT400020843	Potato	cytosol	73.58	79.59
Solyc11g069150.1.1	Tomato	extracellular	72.83	78.78
GSMUA_Achr11P...	Banana	cytosol	72.45	76.19
TraesCS4A01G220400.2	Wheat	cytosol, plastid	63.4	72.41
TraesCS4D01G095100.1	Wheat	cytosol	64.15	69.96
TraesCS5A01G301400.1	Wheat	unclear	64.15	69.67
TraesCS5B01G299900.1	Wheat	cytosol	64.15	69.67
TraesCS5D01G307400.1	Wheat	cytosol	64.15	68.55
Os09t0515200-01	Rice	cytosol	66.04	68.36
EER99181	Sorghum	plastid	65.66	66.16
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	64.91	65.4
HORVU5Hr1G078810.1	Barley	plastid	63.4	56.0
TraesCS4B01G099100.1	Wheat	golgi	64.15	53.8
Zm00001d021147_P002	Maize	cytosol, plastid	63.4	38.8

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra027934	EnsemblPlants:Bra027934.1	EnsemblPlants:Bra027934.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	UniProt:M4EGM0	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI00025421B8	:	:	:	:	:

Description

AT1G56450 (E=5e-110) PBG1 | PBG1; peptidase/ threonine-type endopeptidase

Coordinates

chrA09:-:9964363..9966010

Molecular Weight (calculated)

29719.6 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.245

Length

265 amino acids

Sequence
(BLAST)

001: MTFTIPIDNG DALKNAEADS QRTLYPYVTG TSIVAIKYKD GVLMASDMGV LMASSLCKFK GFMVDNECAG SYGSTLRYKN IERVKAIGKH SLLGASGEIS
101: DFQEILRYLD ELVLNDNMWD DGNSLGPKEV HNYLTRVMYN RRNKFNPLWN TLVLGGVKNG ESYLGMVSMI GVSFEDNHVA TGFGNHLARP ILRDEWRADL
201: SFEDGVKLLE KCMRVLLYRD RSAINKLQIA KITEEGVTVS QPYSLKTFWE FQAFHNPTAG AQGSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.