Factsheet for Bra038162.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42368	Canola	cytosol	99.59	99.59
Bra038919.1-P	Field mustard	cytosol	55.92	92.57
CDY39004	Canola	extracellular	98.37	92.34
AT1G56450.1	Thale cress	cytosol	92.65	92.28
Bra027934.1-P	Field mustard	cytosol	97.14	89.81
VIT_06s0004g03190.t01	Wine grape	nucleus	82.86	82.86
KRG96935	Soybean	cytosol, nucleus	78.37	82.76
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	77.96	82.33
PGSC0003DMT400020843	Potato	cytosol	80.0	80.0
Solyc11g069150.1.1	Tomato	extracellular	79.18	79.18
GSMUA_Achr11P...	Banana	cytosol	78.78	76.59
TraesCS4A01G220400.2	Wheat	cytosol, plastid	68.57	72.41
TraesCS4D01G095100.1	Wheat	cytosol	69.39	69.96
TraesCS5A01G301400.1	Wheat	unclear	69.39	69.67
TraesCS5B01G299900.1	Wheat	cytosol	69.39	69.67
TraesCS5D01G307400.1	Wheat	cytosol	69.39	68.55
Os09t0515200-01	Rice	cytosol	71.43	68.36
EER99181	Sorghum	plastid	71.02	66.16
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	70.2	65.4
HORVU5Hr1G078810.1	Barley	plastid	68.57	56.0
TraesCS4B01G099100.1	Wheat	golgi	69.39	53.8
Zm00001d021147_P002	Maize	cytosol, plastid	68.16	38.57

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra038162	EnsemblPlants:Bra038162.1	EnsemblPlants:Bra038162.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4FAP7	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000253E515	:

Description

AT1G56450 (E=2e-133) PBG1 | PBG1; peptidase/ threonine-type endopeptidase

Coordinates

chrScaffold000140:-:223695..225468

Molecular Weight (calculated)

27542.9 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.330

Length

245 amino acids

Sequence
(BLAST)

001: MTFTIPIDNG DSVKTAEADS QRTLYPYVTG TSIVAIKYKD GVLMASDMGG SYGSTLRYKN IERMKAIGKH SLLGASGEIS DFQEILRYLD ELVLNDNMWD
101: DGNSLGPKEV HNYLTRVMYN RRNKFNPLWN TLVLGGVKNG ESYLGMVSMI GVSFEDNHVA TGFGNHLARP ILRDEWRADL SFEDGVKLLE KCMRVLLYRD
201: RSAINKLQIA KITEEGVTVS QPYSLKTFWE FKAFNNPTAG AEGSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.