Factsheet for TraesCS4B01G099100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytoskeleton, cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G095100.1	Wheat	cytosol	74.68	97.12
TraesCS4A01G220400.2	Wheat	cytosol, plastid	71.2	96.98
TraesCS5B01G299900.1	Wheat	cytosol	74.37	96.31
Os09t0515200-01	Rice	cytosol	67.72	83.59
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	67.09	80.61
EER99181	Sorghum	plastid	67.09	80.61
GSMUA_Achr11P...	Banana	cytosol	59.49	74.6
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	53.16	72.41
KRG96935	Soybean	cytosol, nucleus	53.16	72.41
VIT_06s0004g03190.t01	Wine grape	nucleus	54.75	70.61
Bra038919.1-P	Field mustard	cytosol	32.91	70.27
CDY41710	Canola	cytosol	53.8	69.39
Bra038162.1-P	Field mustard	cytosol	53.8	69.39
CDY42368	Canola	cytosol	53.48	68.98
AT1G56450.1	Thale cress	cytosol	53.48	68.7
CDY04377	Canola	cytosol, extracellular	53.16	68.57
CDY68783	Canola	cytosol	52.53	67.76
PGSC0003DMT400020843	Potato	cytosol	51.9	66.94
Solyc11g069150.1.1	Tomato	extracellular	51.58	66.53
CDY39004	Canola	extracellular	54.75	66.28
Bra027934.1-P	Field mustard	cytosol	53.8	64.15
CDY54948	Canola	cytosol	46.2	62.66
Zm00001d021147_P002	Maize	cytosol, plastid	67.41	49.19

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
EnsemblPlantsGene:TraesCS4B01G099100	EnsemblPlants:TraesCS4B01G099100.1	TIGR:cd03760	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:104336710..104338929

Molecular Weight (calculated)

35140.8 Da

IEP (calculated)

8.977

GRAVY (calculated)

-0.510

Length

316 amino acids

Sequence
(BLAST)

001: MGLNDSPARL IFPVSHGPDP AACFDDFSSS SQGRKDTERD RERATHTPIP SPSRAEVFRR RAKPSRIKPP RAPMDATAAA AGGGDGTQRT LNPYVTGNSV
101: IAMKYKDGVI MACDTGASYG STLRYKSVER IKEVGKHSLI GGSGEFSDFQ EILRYLDELT LNDHMWDDGN SLGPKEIHAY LTRVMYNRRN KFDPLWNSLV
201: LGGVKKGPKG DEKYLGMVNM IGTHFEENHI ATGFGNHMAI PILRGEWRED MTFEEAVKLI EKCLLVLLYR DRSSINKFQI AKITTEGSTI YPPYALKTNW
301: GFAAFENPSK GAVGTW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.