CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42368	Canola	cytosol	98.78	98.78
CDY41710	Canola	cytosol	97.14	97.14
CDY68783	Canola	cytosol	95.92	95.92
AT1G56450.1	Thale cress	cytosol	93.06	92.68
CDY39004	Canola	extracellular	98.37	92.34
CDY54948	Canola	cytosol	85.71	90.13
VIT_06s0004g03190.t01	Wine grape	nucleus	82.86	82.86
KRG96935	Soybean	cytosol, nucleus	78.37	82.76
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	77.96	82.33
PGSC0003DMT400020843	Potato	cytosol	80.0	80.0
Solyc11g069150.1.1	Tomato	extracellular	79.18	79.18
GSMUA_Achr11P...	Banana	cytosol	77.96	75.79
TraesCS4A01G220400.2	Wheat	cytosol, plastid	67.76	71.55
TraesCS4D01G095100.1	Wheat	cytosol	68.57	69.14
TraesCS5B01G299900.1	Wheat	cytosol	68.57	68.85
TraesCS5A01G301400.1	Wheat	unclear	68.57	68.85
TraesCS5D01G307400.1	Wheat	cytosol	68.57	67.74
Os09t0515200-01	Rice	cytosol	70.61	67.58
EER99181	Sorghum	plastid	70.2	65.4
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	69.39	64.64
HORVU5Hr1G078810.1	Barley	plastid	67.76	55.33
TraesCS4B01G099100.1	Wheat	golgi	68.57	53.16
Zm00001d021147_P002	Maize	cytosol, plastid	67.35	38.11

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:A0A078ETP8	EnsemblPlants:CDY04377	ProteinID:CDY04377	ProteinID:CDY04377.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00118334001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI0004EC6E36	:	:	:	:	:

Description

BnaC04g18160D

Coordinates

chrLK031952:-:954354..956470

Molecular Weight (calculated)

27545.8 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.333

Length

245 amino acids

Sequence
(BLAST)

001: MTFTIPIDNG DSVKNAEADS QRTLYPYVTG TSIVAIKYKD GVLMASDMGG SYGSTLRYKN IERMKAIGKH SLLGASGEIS DFQEILRYLD ELVLNDNMWD
101: DGNSLGPKEV HNYLTRVMYN RRNKFNPLWN TLVLGGVKNG ESYLGMVSMI GVSFEDNHVA TGFGNHLARP ILRDEWHADL SFEDGVKLLE KCMRVLLYRD
201: RSAINKLQIA KITEEGVTVS QPYSLNTFWE FKAFHNPTAG AEGSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.