Factsheet for TraesCS4A01G220400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G095100.1	Wheat	cytosol	97.41	93.0
TraesCS5A01G301400.1	Wheat	unclear	97.41	92.62
Os09t0515200-01	Rice	cytosol	89.66	81.25
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	89.22	78.71
EER99181	Sorghum	plastid	89.22	78.71
GSMUA_Achr11P...	Banana	cytosol	79.31	73.02
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	71.55	71.55
KRG96935	Soybean	cytosol, nucleus	71.55	71.55
TraesCS4B01G099100.1	Wheat	golgi	96.98	71.2
Bra038919.1-P	Field mustard	cytosol	44.83	70.27
VIT_06s0004g03190.t01	Wine grape	nucleus	72.41	68.57
CDY41710	Canola	cytosol	72.41	68.57
Bra038162.1-P	Field mustard	cytosol	72.41	68.57
CDY42368	Canola	cytosol	71.98	68.16
CDY04377	Canola	cytosol, extracellular	71.55	67.76
CDY68783	Canola	cytosol	70.69	66.94
AT1G56450.1	Thale cress	cytosol	70.69	66.67
PGSC0003DMT400020843	Potato	cytosol	69.83	66.12
Solyc11g069150.1.1	Tomato	extracellular	69.4	65.71
CDY39004	Canola	extracellular	71.55	63.6
Bra027934.1-P	Field mustard	cytosol	72.41	63.4
CDY54948	Canola	cytosol	61.64	61.37
Zm00001d021147_P002	Maize	cytosol, plastid	89.22	47.81

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS4A01G220400	EnsemblPlants:TraesCS4A01G220400.2	TIGR:cd03760	SEG:seg	:

Description

No Description!

Coordinates

chr4A:+:523457011..523458075

Molecular Weight (calculated)

26193.5 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.322

Length

232 amino acids

Sequence
(BLAST)

001: MPYCITRNPY VTGNSVIAMK YKDGVIMACD TGASYGSTLR YKSVERIKAV GKHSLIGGSG EFSDFQEILR YLDELTLNDH MWDDGNSLGP KEIHAYLTRV
101: MYNRRNKFDP LWNSLVLGGV KKGPKGDEKY LGMVNMIGTH FEENHIATGF GNHMAIPILR GEWREDMTFE EAVKLIEKCL LVLLYRDRSS INKFQIAKIT
201: TEGSTIYPPY ALKTNWGFAA FENPSKGAVG TW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.