Factsheet for VIT_06s0004g03190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020843	Potato	cytosol	88.16	88.16
Solyc11g069150.1.1	Tomato	extracellular	87.35	87.35
KRG96935	Soybean	cytosol, nucleus	81.22	85.78
Bra038919.1-P	Field mustard	cytosol	51.43	85.14
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	80.41	84.91
CDY42368	Canola	cytosol	83.27	83.27
Bra038162.1-P	Field mustard	cytosol	82.86	82.86
CDY04377	Canola	cytosol, extracellular	82.86	82.86
CDY41710	Canola	cytosol	82.04	82.04
CDY68783	Canola	cytosol	81.63	81.63
GSMUA_Achr11P...	Banana	cytosol	82.04	79.76
AT1G56450.1	Thale cress	cytosol	80.0	79.67
CDY39004	Canola	extracellular	82.86	77.78
Bra027934.1-P	Field mustard	cytosol	82.04	75.85
CDY54948	Canola	cytosol	70.2	73.82
TraesCS4A01G220400.2	Wheat	cytosol, plastid	68.57	72.41
TraesCS5A01G301400.1	Wheat	unclear	70.2	70.49
TraesCS5B01G299900.1	Wheat	cytosol	70.2	70.49
TraesCS4D01G095100.1	Wheat	cytosol	69.8	70.37
TraesCS5D01G307400.1	Wheat	cytosol	70.2	69.35
Os09t0515200-01	Rice	cytosol	71.43	68.36
EER99181	Sorghum	plastid	71.84	66.92
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	71.84	66.92
HORVU5Hr1G078810.1	Barley	plastid	70.2	57.33
TraesCS4B01G099100.1	Wheat	golgi	70.61	54.75
Zm00001d021147_P002	Maize	cytosol, plastid	69.39	39.26

Protein Annotations

EntrezGene:100263853	wikigene:100263853	MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	ProteinID:CBI16281	ProteinID:CBI16281.3
UniProt:D7SKV3	EMBL:FN594951	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005839	GO:GO:0005840	GO:GO:0006508	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0022626	GO:GO:0046686	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	EntrezGene:LOC100263853	wikigene:LOC100263853	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.A13	TIGR:TC51710	TIGR:TC64144
TIGR:TC68306	UniParc:UPI0001983743	ArrayExpress:VIT_06s0004g03190	EnsemblPlantsGene:VIT_06s0004g03190	EnsemblPlants:VIT_06s0004g03190.t01	unigene:Vvi.326
RefSeq:XP_002284989	RefSeq:XP_002284989.1	:	:	:	:

Description

Proteasome subunit beta [Source:UniProtKB/TrEMBL;Acc:D7SKV3]

Coordinates

chr6:+:3969995..3974786

Molecular Weight (calculated)

27571.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.337

Length

245 amino acids

Sequence
(BLAST)

001: MNLMDSSHSN PMSLCSQADS QRTLYPYVTG TSVIGVKYKD GILMAADMGG SYGSTLRYKS VERMKPIGKH SLLGASGEIS DFQEILHYLD ELILYDNMWD
101: DGNSLGPKEV HSYLTRVMYN RRNKFNPLWN SLVLGGVKNG QKYLGTVSMI GVHFEDNHVA TGFGNHLARP ILRDEWHEDL SFEDGVKLLE KCMRVLLYRD
201: RSAVNKLQIA KITEEGVTIS QPYSLKTFWG FSAFQNPTVG AEGSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.