CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	98.71	98.71
VIT_06s0004g03190.t01	Wine grape	nucleus	85.78	81.22
PGSC0003DMT400020843	Potato	cytosol	84.48	80.0
Solyc11g069150.1.1	Tomato	extracellular	83.62	79.18
Bra038919.1-P	Field mustard	cytosol	50.43	79.05
CDY42368	Canola	cytosol	83.19	78.78
Bra038162.1-P	Field mustard	cytosol	82.76	78.37
CDY04377	Canola	cytosol, extracellular	82.76	78.37
CDY68783	Canola	cytosol	82.76	78.37
CDY41710	Canola	cytosol	82.33	77.96
AT1G56450.1	Thale cress	cytosol	82.33	77.64
GSMUA_Achr11P...	Banana	cytosol	82.76	76.19
CDY39004	Canola	extracellular	83.19	73.95
Bra027934.1-P	Field mustard	cytosol	82.33	72.08
TraesCS4A01G220400.2	Wheat	cytosol, plastid	71.55	71.55
CDY54948	Canola	cytosol	70.26	69.96
TraesCS4D01G095100.1	Wheat	cytosol	72.41	69.14
TraesCS5A01G301400.1	Wheat	unclear	72.41	68.85
TraesCS5B01G299900.1	Wheat	cytosol	72.41	68.85
TraesCS5D01G307400.1	Wheat	cytosol	72.41	67.74
Os09t0515200-01	Rice	cytosol	74.57	67.58
EER99181	Sorghum	plastid	74.14	65.4
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	74.14	65.4
HORVU5Hr1G078810.1	Barley	plastid	72.41	56.0
TraesCS4B01G099100.1	Wheat	golgi	72.41	53.16
Zm00001d021147_P002	Maize	cytosol, plastid	73.28	39.26

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	EMBL:ACUP02012169	EnsemblPlantsGene:GLYMA_19G242200	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603
UniProt:I1NC65	InterPro:IPR023333	InterPro:IPR029055	EnsemblPlants:KRG96935	ProteinID:KRG96935	ProteinID:KRG96935.1
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
MEROPS:T01.A13	UniParc:UPI00023DDCCE	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:48994249..48997783

Molecular Weight (calculated)

26352.6 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.326

Length

232 amino acids

Sequence
(BLAST)

001: MERVAESERT LYPYVTGSSV VAIKYKDGIL MAADMGGSYG STLRYKSVER IKPIGKHSLL GASGEISDFQ EILRYLDELI LYDNMWDDGN SLGPKEVHNY
101: LTRVMYNRRN KFNPLWNALV LGGVKNGQKY LGMVNMIGIN FEDNHVATGL GNHLARPILR DEWHENLTFE EGVKLLEKCM RVLLYRDRSA VNKIQISKIT
201: DEGATVFPPF SLKTYWEFSA FKNPTVGAEG SW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.