CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42368	Canola	cytosol	92.72	98.78
Bra038162.1-P	Field mustard	cytosol	92.34	98.37
CDY04377	Canola	cytosol, extracellular	92.34	98.37
CDY41710	Canola	cytosol	90.42	96.33
CDY68783	Canola	cytosol	89.27	95.1
AT1G56450.1	Thale cress	cytosol	86.97	92.28
CDY54948	Canola	cytosol	80.84	90.56
KRG96935	Soybean	cytosol, nucleus	73.95	83.19
VIT_06s0004g03190.t01	Wine grape	nucleus	77.78	82.86
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	73.56	82.76
PGSC0003DMT400020843	Potato	cytosol	75.1	80.0
Solyc11g069150.1.1	Tomato	extracellular	74.33	79.18
GSMUA_Achr11P...	Banana	cytosol	73.56	76.19
TraesCS4A01G220400.2	Wheat	cytosol, plastid	63.6	71.55
TraesCS4D01G095100.1	Wheat	cytosol	64.37	69.14
TraesCS5B01G299900.1	Wheat	cytosol	64.37	68.85
TraesCS5A01G301400.1	Wheat	unclear	64.37	68.85
Os09t0515200-01	Rice	cytosol	66.67	67.97
TraesCS5D01G307400.1	Wheat	cytosol	64.37	67.74
EER99181	Sorghum	plastid	66.28	65.78
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	65.52	65.02
HORVU5Hr1G078810.1	Barley	plastid	63.98	55.67
TraesCS4B01G099100.1	Wheat	golgi	66.28	54.75
Zm00001d021147_P002	Maize	cytosol, plastid	63.98	38.57

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:A0A078HNQ2	UniProt:A0A078HNQ2	EnsemblPlants:CDY39004	ProteinID:CDY39004
ProteinID:CDY39004.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00067096001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI0004EE1EBA	:	:	:	:	:

Description

BnaC01g27310DProteasome subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HNQ2]

Coordinates

chrLK032437:+:245157..247158

Molecular Weight (calculated)

29439.1 Da

IEP (calculated)

6.038

GRAVY (calculated)

-0.244

Length

261 amino acids

Sequence
(BLAST)

001: MFLLPVSFSI NADYFFLQFT IPIDNGDSVK NAEADSQRTL YPYVTGTSIV AIKYKDGVLM ASDMGGSYGS TLRYKNIERM KAIGKHSLLG ASGEISDFQE
101: ILRYLDELVL NDNMWDDGNS LGPKEVHNYL TRVMYNRRNK FNPLWNTLVL GGVKNGESYL GMVSMIGVSF EDNHVATGFG NHLARPILRD EWHADLSFED
201: GVKLLEKCMR VLLYRDRSAI NKLQIAKITE EGVTVSQPYS LKTFWEFKAF NNPTAGAEGS W

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.