Factsheet for HORVU5Hr1G078810.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G299900.1	Wheat	cytosol	78.0	95.9
TraesCS5A01G301400.1	Wheat	unclear	78.0	95.9
TraesCS5D01G307400.1	Wheat	cytosol	78.67	95.16
Os09t0515200-01	Rice	cytosol	70.33	82.42
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	71.33	81.37
EER99181	Sorghum	plastid	71.33	81.37
GSMUA_Achr11P...	Banana	cytosol	63.33	75.4
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	56.0	72.41
KRG96935	Soybean	cytosol, nucleus	56.0	72.41
Bra038919.1-P	Field mustard	cytosol	34.67	70.27
VIT_06s0004g03190.t01	Wine grape	nucleus	57.33	70.2
CDY41710	Canola	cytosol	56.0	68.57
Bra038162.1-P	Field mustard	cytosol	56.0	68.57
CDY42368	Canola	cytosol	55.67	68.16
PGSC0003DMT400020843	Potato	cytosol	55.67	68.16
AT1G56450.1	Thale cress	cytosol	55.67	67.89
Solyc11g069150.1.1	Tomato	extracellular	55.33	67.76
CDY04377	Canola	cytosol, extracellular	55.33	67.76
CDY68783	Canola	cytosol	54.67	66.94
CDY39004	Canola	extracellular	55.67	63.98
Bra027934.1-P	Field mustard	cytosol	56.0	63.4
CDY54948	Canola	cytosol	48.0	61.8
Zm00001d021147_P002	Maize	cytosol, plastid	69.67	48.27

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	UniProt:A0A287RXT6	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005839	GO:GO:0005840	GO:GO:0006508	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0022626	GO:GO:0046686	GO:GO:0051603
EnsemblPlantsGene:HORVU5Hr1G078810	EnsemblPlants:HORVU5Hr1G078810.1	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000B4610B5	SEG:seg

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A287RXT6]

Coordinates

chrchr5H:-:555818907..555821257

Molecular Weight (calculated)

33506.0 Da

IEP (calculated)

10.035

GRAVY (calculated)

-0.632

Length

300 amino acids

Sequence
(BLAST)

001: TRSARKKRNT RRRGTEAGAT APPSQTTRPN PRRRLPLTRR AKPTQIESPP SLPPESMDGS HSHAAGGGEG TQRTLNPYVT GNSVIAMKYK DGVIMACDTG
101: ASYGSTLRYK SVERIKEVGK HSLIGGSGEF SDFQEILRYL DELTLNDHMW DDGNSLGPKE IHAYLTRVMY NRRNKFDPLW NSLVLGGVKK GPKGDEKYLG
201: MVNMIGTHFE ENHIATGFGN HMAIPILRGE WREDMTFEEA VKLIEKCLLV LLYRDRSSIN KFQIAKITTE GSTIYPPYAL KTNWGFAAFE NPSKGAVGTW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.