Factsheet for Zm00001d021147_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G220400.2	Wheat	cytosol, plastid	47.81	89.22
TraesCS5B01G299900.1	Wheat	cytosol	48.04	85.25
TraesCS5A01G301400.1	Wheat	unclear	48.04	85.25
TraesCS4D01G095100.1	Wheat	cytosol	47.58	84.77
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	51.27	84.41
TraesCS5D01G307400.1	Wheat	cytosol	48.04	83.87
Os09t0515200-01	Rice	cytosol	48.96	82.81
GSMUA_Achr11P...	Banana	cytosol	42.96	73.81
KRG96935	Soybean	cytosol, nucleus	39.26	73.28
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	39.03	72.84
Bra038919.1-P	Field mustard	cytosol	24.48	71.62
HORVU5Hr1G078810.1	Barley	plastid	48.27	69.67
VIT_06s0004g03190.t01	Wine grape	nucleus	39.26	69.39
CDY41710	Canola	cytosol	38.8	68.57
AT1G56450.1	Thale cress	cytosol	38.8	68.29
Bra038162.1-P	Field mustard	cytosol	38.57	68.16
CDY42368	Canola	cytosol	38.34	67.76
TraesCS4B01G099100.1	Wheat	golgi	49.19	67.41
PGSC0003DMT400020843	Potato	cytosol	38.11	67.35
CDY04377	Canola	cytosol, extracellular	38.11	67.35
CDY68783	Canola	cytosol	37.88	66.94
Solyc11g069150.1.1	Tomato	extracellular	37.64	66.53
CDY39004	Canola	extracellular	38.57	63.98
Bra027934.1-P	Field mustard	cytosol	38.8	63.4
CDY54948	Canola	cytosol	32.79	60.94

Protein Annotations

EntrezGene:100283981	MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	UniProt:A0A1D6I8L7	InterPro:DUF4504	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	ProteinID:ONM56392.1	PFAM:PF00227	PFAM:PF14953	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	UniParc:UPI000843D6B0	EnsemblPlantsGene:Zm00001d021147	EnsemblPlants:Zm00001d021147_P002	EnsemblPlants:Zm00001d021147_T002	SEG:seg

Description

Proteasome subunit beta type-4

Coordinates

chr7:-:144097014..144107041

Molecular Weight (calculated)

48826.6 Da

IEP (calculated)

7.041

GRAVY (calculated)

-0.213

Length

433 amino acids

Sequence
(BLAST)

001: MAAAAGPYKE MLEVVNACAA RIRWRLRPAS KRRLLNDILF LCTGLRPVVL VDYGGTMPQL QENLCGLLYH ARQLLTTIEE NDTVLELVSI QDQFTAKFPL
101: DLSDVRPGIT KQMSGNPQST VVAECTDNHV EDRTLLVVDL SSFLENTQIA LPSLNGWLLG YPVTYLFRNA SSEAAIQNLS RQSLHIYRVY VCGSYRSAGE
201: RREEELMRYP YVTGNSVIAL KYKDGVIMAC DTGASYGSTL RYKSVERIKA VGKHSIIGAS GEFSDFQEIL RYLDELTLSD HMWDDGNSLG PKEIHSYLTR
301: VMYNRRNKFD PLWNSLVLGG VKKGPKGDEK YLGMVNMIGT HFEENHVATG FGNHMAIPIL RAEWRDDMTF EEAVKLVEKC LVVLLYRDRS SINKFQIAKI
401: TSEGSTIYPP YSLKTYWGFT HFENPAQGAV GSW

Best Arabidopsis Sequence Match ( AT3G59490.4 )
(BLAST)

001: MEVPSSEELL QFLSSCLSQI KWRLKSNSKR RLEIDVLALC TGMRPVVMID YGGKMPELQN RLLSLLELIR EGLPVFKDLK VMVIEDMIYL INVRSLPKFV
101: SSSLDSEPEL FFIDLEQDPP KMVTQSKESN LGMQLRSIQK LFSSTFPLDD SNTDTTTVLD EANSSQTSLC IDLSCCLQDT KVTIPTLNGW LLDYPVVYLF
201: GTDHIEEAIY NLSTKSLRLF KVLVCRNGTT EKDSHLEELT RYKNFKTKMI TLLPKQKCLC KSVFCESTQF FSAI

Arabidopsis Description

unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G59490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.