Factsheet for Solyc11g069150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020843	Potato	cytosol	99.18	99.18
VIT_06s0004g03190.t01	Wine grape	nucleus	87.35	87.35
KRG96935	Soybean	cytosol, nucleus	79.18	83.62
Bra038919.1-P	Field mustard	cytosol	50.2	83.11
KRH68696	Soybean	cytosol, endoplasmic reticulum, nucleus	78.37	82.76
CDY42368	Canola	cytosol	79.59	79.59
Bra038162.1-P	Field mustard	cytosol	79.18	79.18
CDY04377	Canola	cytosol, extracellular	79.18	79.18
CDY41710	Canola	cytosol	78.78	78.78
CDY68783	Canola	cytosol	78.78	78.78
AT1G56450.1	Thale cress	cytosol	77.14	76.83
GSMUA_Achr11P...	Banana	cytosol	78.78	76.59
CDY39004	Canola	extracellular	79.18	74.33
Bra027934.1-P	Field mustard	cytosol	78.78	72.83
CDY54948	Canola	cytosol	67.35	70.82
TraesCS4A01G220400.2	Wheat	cytosol, plastid	65.71	69.4
TraesCS5A01G301400.1	Wheat	unclear	67.35	67.62
TraesCS5B01G299900.1	Wheat	cytosol	67.35	67.62
TraesCS4D01G095100.1	Wheat	cytosol	66.94	67.49
TraesCS5D01G307400.1	Wheat	cytosol	67.35	66.53
Os09t0515200-01	Rice	cytosol	68.16	65.23
EER99181	Sorghum	plastid	69.39	64.64
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	69.39	64.64
HORVU5Hr1G078810.1	Barley	plastid	67.76	55.33
TraesCS4B01G099100.1	Wheat	golgi	66.53	51.58
Zm00001d021147_P002	Maize	cytosol, plastid	66.53	37.64

Protein Annotations

MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005839	GO:GO:0005840	GO:GO:0006508	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0022626	GO:GO:0046686	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	UniProt:K4DA71	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc11g069150.1	EnsemblPlants:Solyc11g069150.1.1	MEROPS:T01.A13	UniParc:UPI000276A7AE

Description

Proteasome subunit beta [Source:UniProtKB/TrEMBL;Acc:K4DA71]

Coordinates

chr11:-:53750995..53754833

Molecular Weight (calculated)

27600.0 Da

IEP (calculated)

7.734

GRAVY (calculated)

-0.375

Length

245 amino acids

Sequence
(BLAST)

001: MNVMDSAPAK SSLMSPESDI QRTQFPYVTG TSVVGIKYKD GILLAADMGG SYGSTIRYKS VDRLKPVGKH SLLGASGEIS DFQEIMKYLD ELILYDNMWD
101: DGNSLGPKEV HNYLTRVMYN RRNKFNPLWN SLVLGGVKNG QKYLGTVSMI GVHYEDNHVA TGFGNHLARP ILRDEWHENL SYEEGVKLLE KCMRVLLYRD
201: RSAVNKLQIA KITEEGVTIS QPYSLKTFWN FSAFQNPTVG AEGSW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.