CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96935	Soybean	cytosol, nucleus	98.71	98.71
VIT_06s0004g03190.t01	Wine grape	nucleus	84.91	80.41
PGSC0003DMT400020843	Potato	cytosol	83.62	79.18
Bra038919.1-P	Field mustard	cytosol	50.0	78.38
CDY42368	Canola	cytosol	82.76	78.37
Solyc11g069150.1.1	Tomato	extracellular	82.76	78.37
Bra038162.1-P	Field mustard	cytosol	82.33	77.96
CDY04377	Canola	cytosol, extracellular	82.33	77.96
CDY68783	Canola	cytosol	82.33	77.96
CDY41710	Canola	cytosol	81.9	77.55
AT1G56450.1	Thale cress	cytosol	81.47	76.83
GSMUA_Achr11P...	Banana	cytosol	81.9	75.4
CDY39004	Canola	extracellular	82.76	73.56
Bra027934.1-P	Field mustard	cytosol	81.9	71.7
TraesCS4A01G220400.2	Wheat	cytosol, plastid	71.55	71.55
CDY54948	Canola	cytosol	69.83	69.53
TraesCS4D01G095100.1	Wheat	cytosol	72.41	69.14
TraesCS5A01G301400.1	Wheat	unclear	72.41	68.85
TraesCS5B01G299900.1	Wheat	cytosol	72.41	68.85
TraesCS5D01G307400.1	Wheat	cytosol	72.41	67.74
Os09t0515200-01	Rice	cytosol	74.57	67.58
EER99181	Sorghum	plastid	73.71	65.02
Zm00001d006125_P002	Maize	cytosol, peroxisome, plastid	73.28	64.64
HORVU5Hr1G078810.1	Barley	plastid	72.41	56.0
TraesCS4B01G099100.1	Wheat	golgi	72.41	53.16
Zm00001d021147_P002	Maize	cytosol, plastid	72.84	39.03

Protein Annotations

EntrezGene:100499795	MapMan:19.2.6.1.2.7	Gene3D:3.60.20.10	EMBL:ACUP02002121	EnsemblPlantsGene:GLYMA_03G244700	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	UniProt:I1JRK8	InterPro:IPR023333	InterPro:IPR029055	EnsemblPlants:KRH68696	ProteinID:KRH68696
ProteinID:KRH68696.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PIRSF:PIRSF001213	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF5	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_endopept_cplx_B	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	MEROPS:T01.A13	UniParc:UPI00023C0FE9	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:44216531..44219447

Molecular Weight (calculated)

26307.6 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.279

Length

232 amino acids

Sequence
(BLAST)

001: MELVAESERT LYPYVTGSSV VAIKYKDGIL MAADMGGSYG STLRYKSVER IKPIGKHSLL GASGEISDFQ EILRYLDELI LYDNMWEDGN SLGPKEVHNY
101: LTRVMYNRRN KFNPLWNALV LGGVKNGQKY LGMVNMIGIN FEDNHVATGL GNHLARPILR DEWHENLTFE EGVKLLEKCM RVLLYRDRSA VNKIQISKIT
201: DEGATVFPPF SLKTYWEFAA FKNPTVGAEG SW

Best Arabidopsis Sequence Match ( AT1G56450.1 )
(BLAST)

001: MTTFSVPIDN GDSMKIAEEE SQRTLYPYVT GTSIVAIKYK DGVLMASDMG GSYGSTLRYK NIERVKAIGK HSLLGASGEI SDFQEILRYL DELTLNDNMW
101: DDGNSLGPKE IHNYLTRVMY NRRNKFNPLW NTLVLGGVKN GKSYLGMVSM IGVSFEDDHV ATGFGNHLAR PILRDEWHAD LSFEDGVKLL EKCMRVLLYR
201: DRSAINKLQI AKITEEGVTV SQPYSLKTYW EFSSFHNPTA GAAGSW

Arabidopsis Description

PBG1Proteasome subunit beta type-4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DLR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.